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    Commd10 COMM domain containing 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361323, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Commd10provided by RGD
    Official Full Name
    COMM domain containing 10provided by RGD
    Primary source
    RGD:1303015
    See related
    EnsemblRapid:ENSRNOG00000003958 AllianceGenome:RGD:1303015
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Arfip2-ps1
    Summary
    Predicted to be located in nucleoplasm. Orthologous to human COMMD10 (COMM domain containing 10). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 163.3), Adrenal (RPKM 148.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Commd10 in Genome Data Viewer
    Location:
    18q11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (41927802..42061384)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (39741219..39874801)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (41022487..41158374)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene galectin 1, pseudogene 2 Neighboring gene ARF like GTPase 14 effector protein like Neighboring gene arfaptin-2-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase like 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC94865

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    COMM domain-containing protein 10
    Names
    ADP-ribosylation factor interacting protein 2, pseudogene 1
    arfaptin-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004276.2 → NP_001004276.1  COMM domain-containing protein 10 isoform 1

      See identical proteins and their annotated locations for NP_001004276.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000018
      UniProtKB/TrEMBL
      A0A8I6GDB4, F7ERY3, Q68FS9
      Related
      ENSRNOP00000107792.1, ENSRNOT00000166404.1
      Conserved Domains (1) summary
      cd04758
      Location:15 → 201
      Commd10; COMM_Domain containing protein 10. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several ...

    2. NM_001428843.1 → NP_001415772.1  COMM domain-containing protein 10 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000018
      UniProtKB/TrEMBL
      A6IWX9

    3. NM_001428844.1 → NP_001415773.1  COMM domain-containing protein 10 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000018
      UniProtKB/TrEMBL
      A0A8I6AI54

    4. NM_001428845.1 → NP_001415774.1  COMM domain-containing protein 10 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000018

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      41927802..42061384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063277471.1 → XP_063133541.1  COMM domain-containing protein 10 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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