psf-2 putative DNA replication complex GINS protein PSF2 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: psf-2
Official Full Name: putative DNA replication complex GINS protein PSF2
Primary source: WormBase:WBGene00009287
Locus tag: CELE_F31C3.5
See related: AllianceGenome:WB:WBGene00009287
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be involved in double-strand break repair via break-induced replication. Predicted to be located in nuclear chromosome. Predicted to be part of GINS complex. Orthologous to human GINS2 (GINS complex subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See psf-2 in Genome Data Viewer

Location:: chromosome: I

Exon count:: 2

Sequence:: Chromosome: I; NC_003279.8 (15053010..15053672)

Chromosome I - NC_003279.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F31C3.5 (e-PCR)
- UniSTS:320530

STS1-22 (e-PCR)
- UniSTS:241713

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Process	Evidence Code	Pubs
involved_in DNA replication	IEA Inferred from Electronic Annotation more info
involved_in DNA-templated DNA replication	IEA Inferred from Electronic Annotation more info
involved_in double-strand break repair via break-induced replication	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of GINS complex	IBA Inferred from Biological aspect of Ancestor more info
located_in nuclear chromosome	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of protein-DNA complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: putative DNA replication complex GINS protein PSF2

NP_493627.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003279.8 Reference assembly

Range

15053010..15053672

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_061226.3 → NP_493627.1 putative DNA replication complex GINS protein PSF2 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_493627.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O62193

Conserved Domains (1) summary

cd11712
Location:56 → 174

GINS_A_psf2; Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)