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    bgnt-1.4 B3GNT1, Beta-1,3-N-acetylGucosamiNylTransferase 1, homolog;Glyco_trans_2-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182795, updated on 2-Nov-2024

    Summary

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    Official Symbol
    bgnt-1.4
    Official Full Name
    B3GNT1, Beta-1,3-N-acetylGucosamiNylTransferase 1, homolog;Glyco_trans_2-like domain-containing protein
    Primary source
    WormBase:WBGene00015982
    Locus tag
    CELE_C18G1.3
    See related
    AllianceGenome:WB:WBGene00015982
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A13. Orthologous to human B4GAT1 (beta-1,4-glucuronyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See bgnt-1.4 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    11
    Sequence:
    Chromosome: V; NC_003283.11 (4760974..4764060)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Guanyl-specific ribonuclease pgl-3 Neighboring gene ncRNA Neighboring gene L-Fucosyltransferase Neighboring gene FERM domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Carbohydrates and glycosylation. Berninsone PM. WormBook, 2006 Dec 18. PMID 18050430, Free PMC Article
    2. Increasing Complexity of the N-Glycome During Caenorhabditis Development. Wilson IBH, et al. Mol Cell Proteomics, 2023 Mar. PMID 36717059, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    B3GNT1, Beta-1,3-N-acetylGucosamiNylTransferase 1, homolog;Glyco_trans_2-like domain-containing protein
    NP_001256048.1
    • Confirmed by transcript evidence
    NP_001256050.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4760974..4764060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269121.3 → NP_001256050.1  Glyco_trans_2-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256050.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D1YSH9
      Conserved Domains (1) summary
      pfam13896
      Location:1 → 189
      Glyco_transf_49; Glycosyl-transferase for dystroglycan

    2. NM_001269119.1 → NP_001256048.1  B3GNT1, Beta-1,3-N-acetylGucosamiNylTransferase 1, homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256048.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYW8
      Conserved Domains (1) summary
      pfam13896
      Location:83 → 382
      Glyco_transf_49; Glycosyl-transferase for dystroglycan
    Nucleotide Protein
    Heading Accession and Version

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