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    C23G10.2 RutC family protein C23G10.2 [ Caenorhabditis elegans ]

    Gene ID: 182812, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C23G10.2
    Official Full Name
    RutC family protein C23G10.2
    Primary source
    WormBase:WBGene00016011
    Locus tag
    CELE_C23G10.2
    See related
    AllianceGenome:WB:WBGene00016011
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable deaminase activity. Predicted to be involved in mRNA catabolic process and negative regulation of translation. Predicted to be active in cytosol and mitochondrion. Orthologous to human RIDA (reactive intermediate imine deaminase A homolog). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C23G10.2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    6
    Sequence:
    Chromosome: III; NC_003281.10 (6208064..6209140)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene NADAR domain-containing protein Neighboring gene Small ribosomal subunit protein uS3 Neighboring gene Serine/threonine-protein phosphatase C23G10.1 Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables deaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in negative regulation of translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RutC family protein C23G10.2
    NP_001021179.1
    • Confirmed by transcript evidence
    NP_741177.2
    • Confirmed by transcript evidence
    NP_741178.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6208064..6209140
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171873.6 → NP_741178.1  RutC family protein C23G10.2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741178.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q10121
      Conserved Domains (1) summary
      TIGR00004
      Location:14 → 135
      TIGR00004; reactive intermediate/imine deaminase

    2. NM_171154.8 → NP_741177.2  RutC family protein C23G10.2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741177.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q10121, Q5NV58, Q5NV59, Q8MQC9
      Conserved Domains (1) summary
      TIGR00004
      Location:41 → 162
      TIGR00004; reactive intermediate/imine deaminase

    3. NM_001026008.6 → NP_001021179.1  RutC family protein C23G10.2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001021179.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q10121
      Conserved Domains (1) summary
      TIGR00004
      Location:7 → 128
      TIGR00004; reactive intermediate/imine deaminase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10121.3

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