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    K09A11.1 BED-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 187182, updated on 9-Dec-2024

    Summary

    Official Symbol
    K09A11.1
    Official Full Name
    BED-type domain-containing protein
    Primary source
    WormBase:WBGene00010704
    Locus tag
    CELE_K09A11.1
    See related
    AllianceGenome:WB:WBGene00010704
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in epithelial system; head; and vulva. Orthologous to several human genes including ZBED1 (zinc finger BED-type containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See K09A11.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Sequence:
    Chromosome: X; NC_003284.9 (13262495..13264589)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene CUB domain-containing protein Neighboring gene tRNA-Thr Neighboring gene ncRNA Neighboring gene tRNA-Tyr Neighboring gene CYtochrome P450 family

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    BED-type domain-containing protein
    NP_510202.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      13262495..13264589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077801.5NP_510202.2  BED-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510202.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21374
      Conserved Domains (2) summary
      smart00614
      Location:649
      ZnF_BED; BED zinc finger
      pfam05699
      Location:509589
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region