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    npax-4 Paired domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182466, updated on 9-Dec-2024

    Summary

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    Official Symbol
    npax-4
    Official Full Name
    Paired domain-containing protein
    Primary source
    WormBase:WBGene00007496
    Locus tag
    CELE_C09G9.7
    See related
    AllianceGenome:WB:WBGene00007496
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in body wall musculature and pseudocoelom. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See npax-4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (8877390..8879910, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Histidine Decarboxyase Like Neighboring gene ncRNA Neighboring gene FIP (Fungus-Induced Protein) Related;TransThyretin-Related family domain Neighboring gene ABC2_membrane domain-containing protein;MARVEL domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pax genes in Caenorhabditis elegans: a new twist. Hobert O, et al. Trends Genet, 1999 Jun. PMID 10354580
    2. A 4D single-cell protein atlas of transcription factors delineates spatiotemporal patterning during embryogenesis. Ma X, et al. Nat Methods, 2021 Aug. PMID 34312566
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in intracellular organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Paired domain-containing protein
    NP_001255345.1
    • Confirmed by transcript evidence
    NP_001255346.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8877390..8879910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268417.2 → NP_001255346.1  Paired domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255346.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17876
      Conserved Domains (1) summary
      cl21459
      Location:79 → 142
      HTH; Helix-turn-helix domains

    2. NM_001268416.3 → NP_001255345.1  Paired domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255345.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H9G2Q0
    Nucleotide Protein
    Heading Accession and Version

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