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    pir-1 RNA/RNP complex-1-interacting phosphatase homolog [ Caenorhabditis elegans ]

    Gene ID: 174460, updated on 9-Dec-2024

    Summary

    Official Symbol
    pir-1
    Official Full Name
    RNA/RNP complex-1-interacting phosphatase homolog
    Primary source
    WormBase:WBGene00011967
    Locus tag
    CELE_T23G7.5
    See related
    AllianceGenome:WB:WBGene00011967
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables inorganic triphosphate phosphatase activity. Predicted to be involved in protein dephosphorylation and regulatory ncRNA-mediated gene silencing. Predicted to be located in cytoplasm and nucleus. Orthologous to human DUSP11 (dual specificity phosphatase 11). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See pir-1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (9177300..9178633)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Calcineurin-like phosphoesterase domain-containing protein Neighboring gene Transcription factor dpl-1 Neighboring gene Exocyst complex component 2 Neighboring gene RNA-binding protein sym-2;RRM domain-containing protein Neighboring gene Potassium channel domain-containing protein Neighboring gene Receptor tyrosine-protein kinase let-23;receptor protein-tyrosine kinase Neighboring gene ncRNA Neighboring gene Transmembrane protein 151 homolog Neighboring gene ncRNA Neighboring gene tRNA-Tyr

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables inorganic triphosphate phosphatase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables phosphoprotein phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulatory ncRNA-mediated gene silencing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    RNA/RNP complex-1-interacting phosphatase homolog
    NP_495959.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      9177300..9178633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063558.6NP_495959.2  RNA/RNP complex-1-interacting phosphatase homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495959.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q22707
      Conserved Domains (1) summary
      pfam00782
      Location:65201
      DSPc; Dual specificity phosphatase, catalytic domain

    RNA

    1. NR_023952.1 RNA Sequence

      Status: REVIEWED