U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TTL coiled coil protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828592, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TTL
    Official Full Name
    coiled coil protein
    Primary source
    TAIR:AT4G24900
    Locus tag
    AT4G24900
    See related
    Araport:AT4G24900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13M23.40; F13M23_40; TITAN-like
    Summary
    Encodes a nuclear C2H2 domain-containing protein involved in embryo and endosperm development.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TTL in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (12814806..12817622)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene snurportin-1 protein Neighboring gene purple acid phosphatase 24 Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene secE/sec61-gamma protein transport protein Neighboring gene thylakoid lumenal 17.9 kDa protein, chloroplast

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. An Arabidopsis gene encoding a C2H2-domain protein with alternatively spliced transcripts is essential for endosperm development. Lu X, et al. J Exp Bot, 2012 Oct. PMID 22991160
    2. TRANSTHYRETIN-LIKE and BYPASS1-LIKE co-regulate growth and cold tolerance in Arabidopsis. Chen T, et al. BMC Plant Biol, 2020 Jul 14. PMID 32664862, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AT4G24900 encoding a C2H2-domain protein with alternatively spliced transcripts is essential for endosperm development.
      Title: An Arabidopsis gene encoding a C2H2-domain protein with alternatively spliced transcripts is essential for endosperm development.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001341718.1
    NM_118622.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within endosperm development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    coiled coil protein
    NP_194220.2
    • unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12814806..12817622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118622.6 → NP_194220.2  coiled coil protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JRR5, Q8L3Y4, Q9SW36
      UniProtKB/TrEMBL
      A0A654FSG6
      Conserved Domains (1) summary
      pfam14968
      Location:12 → 392
      CCDC84; Coiled coil protein 84

    2. NM_001341718.1 → NP_001328379.1  coiled coil protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4G0, A0A654FSG6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JRR5.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.