NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_011903.1Â RefSeqGene
- Range
-
5001..113529
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001379500.1 → NP_001366429.1  collagen alpha-1(XVIII) chain isoform 4 preproprotein
Status: REVIEWED
- Source sequence(s)
-
BX322561, BX322562
- Consensus CDS
-
CCDS42971.1
- UniProtKB/TrEMBL
-
A0AAG2UW65
- Related
- ENSP00000498485.1, ENST00000651438.1
-
NM_030582.4 → NP_085059.2  collagen alpha-1(XVIII) chain isoform 1 preproprotein
See identical proteins and their annotated locations for NP_085059.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1, also known as NCI-493) uses an alternate splice donor in the 5' terminal exon compared to variant 3. The encoded isoform (1) is shorter than isoform 3.
- Source sequence(s)
-
AF018082, BC063833, BX322561
- Consensus CDS
-
CCDS42972.1
- UniProtKB/Swiss-Prot
- A8MVI4, P39060, Q58EX6, Q6RZ39, Q6RZ40, Q6RZ41, Q8N4S4, Q8WXI5, Q96T70, Q9UK38, Q9Y6Q7, Q9Y6Q8
- UniProtKB/TrEMBL
-
A0AAG2UXZ5
- Related
- ENSP00000347665.5, ENST00000355480.10
- Conserved Domains (4) summary
-
- pfam01391
Location:822 → 872
- Collagen; Collagen triple helix repeat (20 copies)
- smart00210
Location:221 → 409
- TSPN; Thrombospondin N-terminal -like domains
- cd00247
Location:1340 → 1510
- Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
- pfam06121
Location:25 → 194
- DUF959; Domain of Unknown Function (DUF959)
-
NM_130444.3 → NP_569711.2  collagen alpha-1(XVIII) chain isoform 3 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (3, also known as NCI-728) represents the longest transcript and encodes the longest isoform (3).
- Source sequence(s)
-
AF018082, BC063833, BX322561
- Consensus CDS
-
CCDS77643.1
- UniProtKB/Swiss-Prot
- A8MVI4, P39060, Q58EX6, Q6RZ39, Q6RZ40, Q6RZ41, Q8N4S4, Q8WXI5, Q96T70, Q9UK38, Q9Y6Q7, Q9Y6Q8
- Related
- ENSP00000352798.4, ENST00000359759.8
- Conserved Domains (5) summary
-
- cd07455
Location:330 → 452
- CRD_Collagen_XVIII; Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 )
- pfam01391
Location:1057 → 1107
- Collagen; Collagen triple helix repeat (20 copies)
- smart00210
Location:456 → 644
- TSPN; Thrombospondin N-terminal -like domains
- cd00247
Location:1575 → 1745
- Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
- pfam06121
Location:25 → 194
- DUF959; Domain of Unknown Function (DUF959)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000021.9Â Reference GRCh38.p14 Primary Assembly
- Range
-
45405165..45513720
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 PATCHES
Genomic
-
NW_025791815.1Â Reference GRCh38.p14 PATCHES
- Range
-
22400..130946
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060945.1Â Alternate T2T-CHM13v2.0
- Range
-
43770922..43881831
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_130445.4: Suppressed sequence
- Description
- NM_130445.4: This RefSeq was removed by NCBI staff. Please email [email protected] for more information.