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    ABCF1 ATP binding cassette subfamily F member 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 281589, updated on 30-Jan-2025

    Summary

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    Official Symbol
    ABCF1provided by VGNC
    Official Full Name
    ATP binding cassette subfamily F member 1provided by VGNC
    Primary source
    VGNC:VGNC:25480
    See related
    EnsemblRapid:ENSBTAG00070011539
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ABCF1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (28394981..28408133, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene protein phosphatase 1 regulatory subunit 10 Neighboring gene microRNA mir-2378 Neighboring gene microRNA mir-877 Neighboring gene proline rich 3 Neighboring gene G protein nucleolar 1 (putative)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Pregnancy-associated changes in genome-wide gene expression profiles in the liver of cow throughout pregnancy. Herath CB, et al. Biochem Biophys Res Commun, 2004 Jan 16. PMID 14697243
    2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-binding cassette sub-family F member 1
    Names
    ATP-binding cassette, sub-family F (GCN20), member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206909.1 → NP_001193838.1  ATP-binding cassette sub-family F member 1

      See identical proteins and their annotated locations for NP_001193838.1

      Status: VALIDATED

      Source sequence(s)
      CK775659, DV882631, EE344169, EE352732, EE358736, EH198138, EH206693
      UniProtKB/TrEMBL
      A0A3Q1NB13
      Related
      ENSBTAP00070015594.1, ENSBTAT00070026160.1
      Conserved Domains (2) summary
      cd03221
      Location:304 → 525
      ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
      COG0488
      Location:302 → 833
      Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      28394981..28408133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials