U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    COA1 cytochrome c oxidase assembly factor 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 505736, updated on 30-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    COA1provided by VGNC
    Official Full Name
    cytochrome c oxidase assembly factor 1provided by VGNC
    Primary source
    VGNC:VGNC:27542
    See related
    EnsemblRapid:ENSBTAG00070016190
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C4H7orf44
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COA1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (77371264..77465908)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene biliverdin reductase A Neighboring gene serine/threonine kinase 17a Neighboring gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 Neighboring gene mitochondrial import inner membrane translocase subunit Tim9-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • FLJ10803, MGC127762

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial cytochrome c oxidase assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial respiratory chain complex I assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytochrome c oxidase assembly factor 1 homolog
    Names
    cytochrome oxidase assembly 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034256.2 → NP_001029428.1  cytochrome c oxidase assembly factor 1 homolog

      See identical proteins and their annotated locations for NP_001029428.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102530
      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      77371264..77465908
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059885454.1 → XP_059741437.1  cytochrome c oxidase assembly factor 1 homolog isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LRY0, A0AAA9SWJ7

    2. XM_059885456.1 → XP_059741439.1  cytochrome c oxidase assembly factor 1 homolog isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LRY0

    3. XM_024990539.2 → XP_024846307.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    4. XM_024990543.2 → XP_024846311.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    5. XM_005205577.5 → XP_005205634.1  cytochrome c oxidase assembly factor 1 homolog isoform X2

      See identical proteins and their annotated locations for XP_005205634.1

      UniProtKB/TrEMBL
      A0A3Q1LRY0, A0AAA9SLE4
      Conserved Domains (1) summary
      pfam08695
      Location:58 → 174
      Coa1; Cytochrome oxidase complex assembly protein 1

    6. XM_059885452.1 → XP_059741435.1  cytochrome c oxidase assembly factor 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MBM6

    7. XM_010804362.4 → XP_010802664.1  cytochrome c oxidase assembly factor 1 homolog isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LRY0, A0AAA9SWJ7
      Related
      ENSBTAP00070021389.1, ENSBTAT00070036373.1
      Conserved Domains (1) summary
      pfam08695
      Location:54 → 170
      Coa1; Cytochrome oxidase complex assembly protein 1

    8. XM_059885455.1 → XP_059741438.1  cytochrome c oxidase assembly factor 1 homolog isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LRY0

    9. XM_024990544.2 → XP_024846312.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    10. XM_024990540.2 → XP_024846308.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    11. XM_024990541.2 → XP_024846309.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    12. XM_059885462.1 → XP_059741445.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081

    13. XM_015469992.3 → XP_015325478.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    14. XM_024990548.2 → XP_024846316.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    15. XM_059885453.1 → XP_059741436.1  cytochrome c oxidase assembly factor 1 homolog isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LRY0, A0AAA9SLE4
      Related
      ENSBTAP00070021385.1, ENSBTAT00070036367.1

    16. XM_059885451.1 → XP_059741434.1  cytochrome c oxidase assembly factor 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MBM6
      Related
      ENSBTAP00070021375.1, ENSBTAT00070036347.1

    17. XM_015469988.3 → XP_015325474.1  cytochrome c oxidase assembly factor 1 homolog isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LRY0, A0AAA9SWJ7
      Related
      ENSBTAP00070021379.1, ENSBTAT00070036358.1
      Conserved Domains (1) summary
      pfam08695
      Location:54 → 170
      Coa1; Cytochrome oxidase complex assembly protein 1

    18. XM_059885458.1 → XP_059741441.1  cytochrome c oxidase assembly factor 1 homolog isoform X5

      UniProtKB/TrEMBL
      A0A3Q1NL33, A0AAA9SS78
      Related
      ENSBTAP00070021392.1, ENSBTAT00070036377.1

    19. XM_059885457.1 → XP_059741440.1  cytochrome c oxidase assembly factor 1 homolog isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LRY0

    20. XM_024990542.2 → XP_024846310.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1

    21. XM_059885461.1 → XP_059741444.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081

    22. XM_059885460.1 → XP_059741443.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081

    23. XM_024990549.2 → XP_024846317.1  cytochrome c oxidase assembly factor 1 homolog isoform X6

      UniProtKB/TrEMBL
      Q3T081
      Conserved Domains (1) summary
      pfam08695
      Location:8 → 124
      Coa1; Cytochrome oxidase complex assembly protein 1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.