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    UTP11 UTP11 small subunit processome component [ Bos taurus (domestic cattle) ]

    Gene ID: 537675, updated on 27-Dec-2024

    Summary

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    Official Symbol
    UTP11provided by VGNC
    Official Full Name
    UTP11 small subunit processome componentprovided by VGNC
    Primary source
    VGNC:VGNC:36741
    See related
    BGD:BT26098; Ensembl:ENSBTAG00000002306
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See UTP11 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (107941135..107957939, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene POU class 3 homeobox 1 Neighboring gene uncharacterized LOC132344941 Neighboring gene transformer-2 protein homolog beta-like Neighboring gene four and a half LIM domains 3 Neighboring gene splicing factor 3a subunit 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC138956

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable U3 small nucleolar RNA-associated protein 11
    Names
    UTP11, small subunit processome component homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098092.1 → NP_001091561.1  probable U3 small nucleolar RNA-associated protein 11

      Status: PROVISIONAL

      Source sequence(s)
      BC140486
      UniProtKB/TrEMBL
      A5D7A6
      Related
      ENSBTAP00000002976.4, ENSBTAT00000002976.5
      Conserved Domains (1) summary
      pfam03998
      Location:13 → 253
      Utp11; Utp11 protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      107941135..107957939 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010803673.4 → XP_010801975.1  probable U3 small nucleolar RNA-associated protein 11 isoform X1

      UniProtKB/TrEMBL
      F1N165
      Conserved Domains (1) summary
      pfam03998
      Location:13 → 253
      Utp11; Utp11 protein
    Nucleotide Protein Strain
    Heading Accession and Version

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