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    TCF20 transcription factor 20 [ Bos taurus (domestic cattle) ]

    Gene ID: 523151, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TCF20provided by VGNC
    Official Full Name
    transcription factor 20provided by VGNC
    Primary source
    VGNC:VGNC:35689
    See related
    BGD:BT10278; Ensembl:ENSBTAG00000000662
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TCF20 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (113101872..113295126, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 2 subfamily D member 43 Neighboring gene cytochrome P450, family 2, subfamily D, polypeptide 6 Neighboring gene microRNA mir-2442 Neighboring gene uncharacterized LOC104976976 Neighboring gene NFAT activating protein with ITAM motif 1 Neighboring gene uncharacterized LOC132345363

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192574.2 → NP_001179503.2  transcription factor 20

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      A0AAA9SHM1, E1B8T3
      Conserved Domains (1) summary
      cd15699
      Location:1714 → 1940
      ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      113101872..113295126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886467.1 → XP_059742450.1  transcription factor 20 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1MEK0

    2. XM_059886464.1 → XP_059742447.1  transcription factor 20 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SHM1
      Related
      ENSBTAP00000083228.1, ENSBTAT00000124575.1

    3. XM_005207396.4 → XP_005207453.1  transcription factor 20 isoform X3

      See identical proteins and their annotated locations for XP_005207453.1

      UniProtKB/TrEMBL
      A0AAA9SHM1, E1B8T3
      Related
      ENSBTAP00000000872.4, ENSBTAT00000000872.6
      Conserved Domains (1) summary
      cd15699
      Location:1714 → 1940
      ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

    4. XM_059886463.1 → XP_059742446.1  transcription factor 20 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SHM1

    5. XM_059886466.1 → XP_059742449.1  transcription factor 20 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MEK0

    6. XM_059886468.1 → XP_059742451.1  transcription factor 20 isoform X6

      UniProtKB/TrEMBL
      A0A3Q1MEK0

    RNA

    1. XR_009494405.1 RNA Sequence

    2. XR_009494404.1 RNA Sequence

    3. XR_009494403.1 RNA Sequence

    4. XR_009494402.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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