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    KCTD5 potassium channel tetramerization domain containing 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 100125308, updated on 27-Dec-2024

    Summary

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    Official Symbol
    KCTD5provided by VGNC
    Official Full Name
    potassium channel tetramerization domain containing 5provided by VGNC
    Primary source
    VGNC:VGNC:30513
    See related
    BGD:BT28530; Ensembl:ENSBTAG00000040575
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See KCTD5 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (2102159..2122816)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene amidohydrolase domain containing 2 Neighboring gene 3-phosphoinositide dependent protein kinase 1 Neighboring gene serine protease 27 Neighboring gene collagen alpha-1(III) chain Neighboring gene serine protease 22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC160111

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cullin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul3-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein KCTD5
    Names
    potassium channel tetramerisation domain containing 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103341.1 → NP_001096811.1  BTB/POZ domain-containing protein KCTD5

      See identical proteins and their annotated locations for NP_001096811.1

      Status: PROVISIONAL

      Source sequence(s)
      BC142481
      UniProtKB/Swiss-Prot
      A5PKG7
      UniProtKB/TrEMBL
      A0AAA9SZW3
      Related
      ENSBTAP00000001047.4, ENSBTAT00000001047.6
      Conserved Domains (2) summary
      smart00225
      Location:45 → 145
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam02214
      Location:46 → 135
      BTB_2; BTB/POZ domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      2102159..2122816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005224377.5 → XP_005224434.1  BTB/POZ domain-containing protein KCTD5 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1NCQ9, A0AAA9SZW3
      Related
      ENSBTAP00000069205.1, ENSBTAT00000069652.2
      Conserved Domains (2) summary
      smart00225
      Location:45 → 145
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam02214
      Location:46 → 135
      BTB_2; BTB/POZ domain

    2. XM_010819041.4 → XP_010817343.1  BTB/POZ domain-containing protein KCTD5 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S464
      Related
      ENSBTAP00000079912.1, ENSBTAT00000124555.1
      Conserved Domains (2) summary
      smart00225
      Location:45 → 145
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam02214
      Location:46 → 135
      BTB_2; BTB/POZ domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5PKG7.1 GenPept UniProtKB/Swiss-Prot:A5PKG7

    Gene LinkOut

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