U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SUB1 SUB1 regulator of transcription [ Bos taurus (domestic cattle) ]

    Gene ID: 533984, updated on 27-Dec-2024

    Summary

    Official Symbol
    SUB1provided by VGNC
    Official Full Name
    SUB1 regulator of transcriptionprovided by VGNC
    Primary source
    VGNC:VGNC:35454
    See related
    BGD:BT19106; Ensembl:ENSBTAG00000021965
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SUB1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (41067802..41089695, complement)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene natriuretic peptide receptor 3 Neighboring gene uncharacterized LOC104975283 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene uncharacterized LOC132343242 Neighboring gene zinc finger RNA binding protein

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General gene information

    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription initiation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    activated RNA polymerase II transcriptional coactivator p15
    Names
    SUB1 homolog, transcriptional regulator
    activated RNA polymerase II transcription cofactor 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105407.1NP_001098877.1  activated RNA polymerase II transcriptional coactivator p15

      See identical proteins and their annotated locations for NP_001098877.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134490
      UniProtKB/TrEMBL
      A7YWC6, F6QZC1
      Related
      ENSBTAP00000029284.6, ENSBTAT00000029284.7
      Conserved Domains (1) summary
      pfam02229
      Location:68115
      PC4; Transcriptional Coactivator p15 (PC4)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      41067802..41089695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059878746.1XP_059734729.1  activated RNA polymerase II transcriptional coactivator p15 isoform X1

      UniProtKB/TrEMBL
      A7YWC6, F6QZC1