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    UBB ubiquitin B [ Bos taurus (domestic cattle) ]

    Gene ID: 281370, updated on 30-Jan-2025

    Summary

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    Official Symbol
    UBBprovided by VGNC
    Official Full Name
    ubiquitin Bprovided by VGNC
    Primary source
    VGNC:VGNC:107281
    See related
    BGD:BT13380; EnsemblRapid:ENSBTAG00070016725
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See UBB in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (33249950..33251856, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD49 Neighboring gene transient receptor potential cation channel subfamily V member 2 Neighboring gene uncharacterized LOC101907886 Neighboring gene enhancer of rudimentary homolog pseudogene Neighboring gene centromere protein V Neighboring gene phosphatidylinositol glycan anchor biosynthesis class L

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Characterization of a full-length cDNA encoding a bovine four tandem-repeat ubiquitin. Wempe F, et al. Biochim Biophys Acta, 1993 Feb 20. PMID 8382528
    2. Ganglioside binding proteins of calf brain with ubiquitin-like N-terminals. Zdebska E, et al. Eur J Biochem, 1992 Dec 1. PMID 1333954
    3. Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting. Hirano S, et al. Nat Struct Mol Biol, 2006 Mar. PMID 16462748
    4. Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain. Akutsu M, et al. FEBS Lett, 2005 Oct 10. PMID 16199040
    5. The biosynthesis of ubiquitin by parathyroid gland. Hamilton JW, et al. Biochem Biophys Res Commun, 1980 Sep 16. PMID 6254502

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyubiquitin-B
    Names
    polyubiquitin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174133.2 → NP_776558.1  polyubiquitin-B

      See identical proteins and their annotated locations for NP_776558.1

      Status: PROVISIONAL

      Source sequence(s)
      Z18245
      UniProtKB/Swiss-Prot
      P0CG53
      Related
      ENSBTAP00070022016.1, ENSBTAT00070037520.1
      Conserved Domains (2) summary
      cd01803
      Location:153 → 228
      Ubiquitin; Ubiquitin
      smart00213
      Location:1 → 72
      UBQ; Ubiquitin homologues

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33249950..33251856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059877709.1 → XP_059733692.1  polyubiquitin-B isoform X1

      UniProtKB/Swiss-Prot
      P0CG53

    2. XM_059877708.1 → XP_059733691.1  polyubiquitin-B isoform X1

      UniProtKB/Swiss-Prot
      P0CG53
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CG53.1 GenPept UniProtKB/Swiss-Prot:P0CG53

    Gene LinkOut

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