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    NAGA alpha-N-acetylgalactosaminidase [ Bos taurus (domestic cattle) ]

    Gene ID: 533357, updated on 1-Jan-2025

    Summary

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    Official Symbol
    NAGAprovided by VGNC
    Official Full Name
    alpha-N-acetylgalactosaminidaseprovided by VGNC
    Primary source
    VGNC:VGNC:31867
    See related
    BGD:BT10750; Ensembl:ENSBTAG00000009506
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NAGA in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (113024572..113032746, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene septin 3 Neighboring gene WBP2 N-terminal like Neighboring gene PH domain containing endocytic trafficking adaptor 2 Neighboring gene single-pass membrane protein with aspartate rich tail 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC140188

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycoside catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oligosaccharide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-N-acetylgalactosaminidase
    Names
    N-acetylgalactosaminidase, alpha-
    alpha-galactosidase B
    NP_001039814.1
    XP_005207464.1
    XP_010804058.1
    XP_059742511.1
    XP_059742512.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046349.1 → NP_001039814.1  alpha-N-acetylgalactosaminidase precursor

      See identical proteins and their annotated locations for NP_001039814.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021618
      UniProtKB/Swiss-Prot
      Q58DH9
      UniProtKB/TrEMBL
      F6Q2U9
      Conserved Domains (1) summary
      cl07893
      Location:25 → 394
      AmyAc_family; Alpha amylase catalytic domain family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      113024572..113032746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886529.1 → XP_059742512.1  alpha-N-acetylgalactosaminidase isoform X2

      UniProtKB/TrEMBL
      F6Q2U9

    2. XM_010805756.4 → XP_010804058.1  alpha-N-acetylgalactosaminidase isoform X1

      See identical proteins and their annotated locations for XP_010804058.1

      UniProtKB/TrEMBL
      F6Q2U9, Q1RMM9
      Conserved Domains (1) summary
      cl07893
      Location:25 → 394
      AmyAc_family; Alpha amylase catalytic domain family

    3. XM_005207407.5 → XP_005207464.1  alpha-N-acetylgalactosaminidase isoform X2

      UniProtKB/TrEMBL
      F6Q2U9
      Related
      ENSBTAP00000012508.4, ENSBTAT00000012508.5
      Conserved Domains (1) summary
      cl07893
      Location:1 → 367
      AmyAc_family; Alpha amylase catalytic domain family

    4. XM_059886528.1 → XP_059742511.1  alpha-N-acetylgalactosaminidase isoform X1

      UniProtKB/TrEMBL
      F6Q2U9, Q1RMM9
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q58DH9.1 GenPept UniProtKB/Swiss-Prot:Q58DH9

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