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    Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 5008101, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative endonuclease or glycosyl hydrolase
    Primary source
    TAIR:AT3G61028
    Locus tag
    AT3G61028
    See related
    Araport:AT3G61028
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (22581473..22584938, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ferritin/ribonucleotide reductase-like family protein Neighboring gene miscRNA Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene Cytochrome P450 superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084852.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Putative endonuclease or glycosyl hydrolase
    NP_001078321.1
    • Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G60940.1); Has 309 Blast hits to 295 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 24; Plants - 280; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_001190148.1
    • Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G60940.1).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22581473..22584938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203219.1 → NP_001190148.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JD25
      Conserved Domains (1) summary
      cd10910
      Location:81 → 183
      limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins

    2. NM_001340070.1 → NP_001327266.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0MDR7, Q1G3N0

    3. NM_001084852.3 → NP_001078321.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0MDR7, Q1G3N0
      Conserved Domains (1) summary
      cd10910
      Location:81 → 227
      limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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