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    TAF6 TATA-box binding protein associated factor 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 505638, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TAF6provided by VGNC
    Official Full Name
    TATA-box binding protein associated factor 6provided by VGNC
    Primary source
    VGNC:VGNC:35577
    See related
    Ensembl:ENSBTAG00000030966
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    p80; TAFII-70; TAFII-80
    Orthologs
    human mouse all
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    Genomic context

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    See TAF6 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (36337997..36345322)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene metallo-beta-lactamase domain containing 1 Neighboring gene canopy FGF signaling regulator 4 Neighboring gene adaptor related protein complex 4 subunit mu 1 Neighboring gene minichromosome maintenance complex component 7 Neighboring gene microRNA mir-106b Neighboring gene microRNA mir-93

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SLIK (SAGA-like) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 6
    Names
    RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
    TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
    TBP-associated factor 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015525.1 → NP_001015525.1  transcription initiation factor TFIID subunit 6

      See identical proteins and their annotated locations for NP_001015525.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021630
      UniProtKB/TrEMBL
      A0A3Q1LVA7, F1MFV5, Q58DG7
      Related
      ENSBTAP00000048341.2, ENSBTAT00000054282.3
      Conserved Domains (2) summary
      cd08050
      Location:15 → 388
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      pfam10631
      Location:619 → 675
      DUF2477; Protein of unknown function (DUF2477)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      36337997..36345322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015460413.3 → XP_015315899.1  transcription initiation factor TFIID subunit 6 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LVA7, A0A3Q1MS65
      Related
      ENSBTAP00000057288.1, ENSBTAT00000082892.2
      Conserved Domains (2) summary
      cd08050
      Location:77 → 450
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      pfam10631
      Location:681 → 737
      DUF2477; Protein of unknown function (DUF2477)

    2. XM_005225024.5 → XP_005225081.1  transcription initiation factor TFIID subunit 6 isoform X2

      See identical proteins and their annotated locations for XP_005225081.1

      UniProtKB/TrEMBL
      A0A3Q1LVA7, F1MFV5, Q58DG7
      Conserved Domains (2) summary
      cd08050
      Location:15 → 388
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      pfam10631
      Location:619 → 675
      DUF2477; Protein of unknown function (DUF2477)

    3. XM_005225022.5 → XP_005225079.1  transcription initiation factor TFIID subunit 6 isoform X2

      See identical proteins and their annotated locations for XP_005225079.1

      UniProtKB/TrEMBL
      A0A3Q1LVA7, F1MFV5, Q58DG7
      Conserved Domains (2) summary
      cd08050
      Location:15 → 388
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      pfam10631
      Location:619 → 675
      DUF2477; Protein of unknown function (DUF2477)

    4. XM_005225023.5 → XP_005225080.1  transcription initiation factor TFIID subunit 6 isoform X2

      See identical proteins and their annotated locations for XP_005225080.1

      UniProtKB/TrEMBL
      A0A3Q1LVA7, F1MFV5, Q58DG7
      Conserved Domains (2) summary
      cd08050
      Location:15 → 388
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      pfam10631
      Location:619 → 675
      DUF2477; Protein of unknown function (DUF2477)

    5. XM_015460414.3 → XP_015315900.1  transcription initiation factor TFIID subunit 6 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LVA7, F1MFV5, Q58DG7
      Conserved Domains (2) summary
      cd08050
      Location:15 → 388
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      pfam10631
      Location:619 → 675
      DUF2477; Protein of unknown function (DUF2477)
    Nucleotide Protein Strain
    Heading Accession and Version

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