U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Trmt6 tRNA methyltransferase 6 [ Mus musculus (house mouse) ]

    Gene ID: 66926, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Trmt6provided by MGI
    Official Full Name
    tRNA methyltransferase 6provided by MGI
    Primary source
    MGI:MGI:1914176
    See related
    Ensembl:ENSMUSG00000037376 AllianceGenome:MGI:1914176
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CGI-09; mKIAA1153; 3300001M20Rik
    Summary
    Predicted to be involved in mRNA processing. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in nucleus. Is expressed in brain ventricular layer; cerebral cortex subventricular zone; olfactory epithelium; submandibular gland primordium; and thymus primordium. Orthologous to human TRMT6 (tRNA methyltransferase 6 non-catalytic subunit). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 8.7), CNS E14 (RPKM 6.1) and 25 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Trmt6 in Genome Data Viewer
    Location:
    2 F2; 2 64.74 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (132646127..132658127, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (132804207..132816054, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene shieldin complex subunit 1 Neighboring gene predicted gene, 52525 Neighboring gene predicted gene, 22245 Neighboring gene chromogranin B Neighboring gene STARR-positive B cell enhancer ABC_E4502 Neighboring gene minichromosome maintenance 8 homologous recombination repair factor Neighboring gene STARR-positive B cell enhancer ABC_E10152 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132672271-132672472 Neighboring gene cardiolipin synthase 1 Neighboring gene leucine rich repeat neuronal 4 Neighboring gene predicted gene, 54154

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. tRNA-m(1)A modification promotes T cell expansion via efficient MYC protein synthesis. Liu Y, et al. Nat Immunol, 2022 Oct. PMID 36138184
    2. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2003 Aug 31. PMID 14621295
    3. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
    4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in mRNA processing ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in mRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of tRNA (m1A) methyltransferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of tRNA (m1A) methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of tRNA (m1A) methyltransferase complex ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
    Names
    mRNA methyladenosine-N(1)-methyltransferase non-catalytic subunit TRM6
    tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6
    tRNA methyltransferase 6 homolog
    tRNA(m1A58)-methyltransferase subunit TRM6
    tRNA(m1A58)MTase subunit TRM6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356442.1 → NP_001343371.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice junction in the 5' end compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AL929562
      Conserved Domains (1) summary
      pfam04189
      Location:14 → 222
      Gcd10p; Gcd10p family

    2. NM_001356443.1 → NP_001343372.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice junction in the 5' end compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AL929562
      Conserved Domains (1) summary
      pfam04189
      Location:1 → 82
      Gcd10p; Gcd10p family

    3. NM_001356444.1 → NP_001343373.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice junction compared to variant 1. The resulting isoform (4) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AL929562
      Related
      ENSMUST00000147336.8
      Conserved Domains (1) summary
      pfam04189
      Location:1 → 70
      Gcd10p; Gcd10p family

    4. NM_175113.3 → NP_780322.2  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform 1

      See identical proteins and their annotated locations for NP_780322.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AK028755
      Consensus CDS
      CCDS50728.1
      UniProtKB/Swiss-Prot
      Q3TJZ8, Q3TME7, Q6ZPW8, Q80Y59, Q8CE96, Q8CEU0
      Related
      ENSMUSP00000044687.7, ENSMUST00000039554.7
      Conserved Domains (1) summary
      pfam04189
      Location:21 → 253
      Gcd10p; Gcd10p family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      132646127..132658127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162501.1 → XP_036018394.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform X1

      UniProtKB/Swiss-Prot
      Q3TJZ8, Q3TME7, Q6ZPW8, Q80Y59, Q8CE96, Q8CEU0
      Conserved Domains (1) summary
      pfam04189
      Location:21 → 253
      Gcd10p; Gcd10p family

    2. XM_030251972.1 → XP_030107832.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform X2

      Conserved Domains (1) summary
      pfam04189
      Location:1 → 70
      Gcd10p; Gcd10p family

    3. XM_036162502.1 → XP_036018395.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform X2

      Conserved Domains (1) summary
      pfam04189
      Location:1 → 70
      Gcd10p; Gcd10p family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CE96.1 GenPept UniProtKB/Swiss-Prot:Q8CE96

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools