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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042062.1 RefSeqGene
- Range
-
5026..21748
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001012409.4 → NP_001012409.1 shugoshin 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (A1) differs in the 5' UTR compared to variant 1. Both variants 1 and A1 encode the same isoform (1).
- Source sequence(s)
-
AB187577, AB193058, AC099057, AF308299, BC032696, BX494477, BX648516
- Consensus CDS
-
CCDS46773.1
- UniProtKB/TrEMBL
- A0A024R2K2, B5BUA4
- Conserved Domains (2) summary
-
- pfam07557
Location:474 → 496
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001012410.5 → NP_001012410.1 shugoshin 1 isoform EF
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1F, PMID:15737064; also known as A2) differs in the 5' UTR and contains an alternate 3' terminal segment compared to variant 1, resulting in a novel 3' coding region and distinct 3' UTR. It encodes isoform 1EF which is longer and has a distinct C-terminus, compared to isoform 1. Both variants Sgo1E and Sgo1F encode the same isoform (1EF).
- Source sequence(s)
-
AB187578, AB193061, BX494477
- Consensus CDS
-
CCDS33716.1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
- Related
- ENSP00000263753.4, ENST00000263753.8
- Conserved Domains (2) summary
-
- pfam07557
Location:474 → 496
- Shugoshin_C; Shugoshin C-terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001012411.4 → NP_001012411.1 shugoshin 1 isoform 1CD
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1C, PMID:15737064; also known as B1) differs in its 5' UTR and uses an alternate in-frame splice site in its central coding region compared to variant 1. It encodes isoform 1CD which is shorter and has a distinct internal amino acid, compared to isoform 1. Both variants Sgo1C and Sgo1D encode the same isoform (1CD).
- Source sequence(s)
-
AB193058, AC099057, AF308299, BC032696, BX494477, BX648516
- Consensus CDS
-
CCDS46774.1
- UniProtKB/Swiss-Prot
-
Q5FBB7
- Related
- ENSP00000389034.1, ENST00000437051.5
- Conserved Domains (2) summary
-
- pfam07557
Location:222 → 244
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001012412.5 → NP_001012412.1 shugoshin 1 isoform 1GH
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1H, PMID:15737064, also known as B2) differs in its 5' UTR, uses an alternate in-frame splice site in its central coding region, and contains an alternate 3' terminal segment compared to variant 1, resulting in a novel 3' coding region and distinct 3' UTR. It encodes isoform 1GH which is shorter, has a distinct internal amino acid, and has a distinct C-terminus, compared to isoform 1. Both variants Sgo1G and Sgo1H encode the same isoform (1GH).
- Source sequence(s)
-
AB187578, AB193063, BX494477
- Consensus CDS
-
CCDS46771.1
- UniProtKB/Swiss-Prot
-
Q5FBB7
- Related
- ENSP00000394625.2, ENST00000419233.6
- Conserved Domains (2) summary
-
- pfam07557
Location:222 → 244
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001012413.4 → NP_001012413.1 shugoshin 1 isoform 1AB
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1B, PMID:15737064; also known as C1) differs in its 5' UTR and lacks an alternate in-frame exon in its central coding region compared to variant 1. It encodes isoform 1AB which is shorter and has a distinct internal amino acid, compared to isoform 1. Both variants Sgo1A and Sgo1B encode the same isoform (1AB).
- Source sequence(s)
-
AB193057, AC099057, AF308299, BC032696, BX494477, BX648516
- Consensus CDS
-
CCDS46772.1
- UniProtKB/Swiss-Prot
-
Q5FBB7
- Conserved Domains (2) summary
-
- pfam07557
Location:205 → 227
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001199251.3 → NP_001186180.1 shugoshin 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. Both variants 1 and A1 encode the same isoform (1).
- Source sequence(s)
-
AB190994, AC099057, AF308299, AK308095, BC032696, BX648516
- Consensus CDS
-
CCDS46773.1
- UniProtKB/TrEMBL
- A0A024R2K2, B5BUA4
- Related
- ENSP00000410458.1, ENST00000412997.6
- Conserved Domains (2) summary
-
- pfam07557
Location:474 → 496
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001199252.3 → NP_001186181.1 shugoshin 1 isoform EF
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1E, PMID:15737064) contains an alternate 3' terminal segment compared to variant 1, resulting in a novel 3' coding region and distinct 3' UTR. It encodes isoform 1EF which is longer and has a distinct C-terminus, compared to isoform 1. Both variants Sgo1E and Sgo1F encode the same isoform (1EF).
- Source sequence(s)
-
AB187578, AB193060, BX494477
- Consensus CDS
-
CCDS33716.1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
- Related
- ENSP00000414129.1, ENST00000421451.5
- Conserved Domains (2) summary
-
- pfam07557
Location:474 → 496
- Shugoshin_C; Shugoshin C-terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001199253.3 → NP_001186182.1 shugoshin 1 isoform 1CD
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1D, PMID:15737064) uses an alternate in-frame splice site in its central coding region compared to variant 1. It encodes isoform 1CD which is shorter and has a distinct internal amino acid, compared to isoform 1. Both variants Sgo1C and Sgo1D encode the same isoform (1CD).
- Source sequence(s)
-
AB193059, AC099057, AF308299, BC032696, BX494477, BX648516
- Consensus CDS
-
CCDS46774.1
- UniProtKB/Swiss-Prot
-
Q5FBB7
- Related
- ENSP00000394613.1, ENST00000417364.1
- Conserved Domains (2) summary
-
- pfam07557
Location:222 → 244
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001199254.3 → NP_001186183.1 shugoshin 1 isoform 1GH
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1G, PMID:15737064) uses an alternate in-frame splice site in its central coding region and contains an alternate 3' terminal segment compared to variant 1, resulting in a novel 3' coding region and distinct 3' UTR. It encodes isoform 1GH which is shorter, has a distinct internal amino acid, and has a distinct C-terminus, compared to isoform 1. Both variants Sgo1G and Sgo1H encode the same isoform (1GH).
- Source sequence(s)
-
AB187578, AB193062, BX494477
- Consensus CDS
-
CCDS46771.1
- UniProtKB/Swiss-Prot
-
Q5FBB7
- Related
- ENSP00000414960.1, ENST00000425061.5
- Conserved Domains (2) summary
-
- pfam07557
Location:222 → 244
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001199255.3 → NP_001186184.1 shugoshin 1 isoform 1AB
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1A, PMID:15737064) lacks an alternate in-frame exon in its central coding region compared to variant 1. It encodes isoform 1AB which is shorter and has a distinct internal amino acid, compared to isoform 1. Both variants Sgo1A and Sgo1B encode the same isoform (1AB).
- Source sequence(s)
-
AB193056, AC099057, AF308299, BC032696, BX494477, BX648516
- Consensus CDS
-
CCDS46772.1
- UniProtKB/Swiss-Prot
-
Q5FBB7
- Related
- ENSP00000394957.1, ENST00000442720.5
- Conserved Domains (2) summary
-
- pfam07557
Location:205 → 227
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001199256.3 → NP_001186185.1 shugoshin 1 isoform 1KL
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1K, PMID:15737064; also known as sSGO1, PMID:18331714) lacks an alternate in-frame exon in its central coding region, and contains an alternate 3' terminal segment compared to variant 1, resulting in a novel 3' coding region and distinct 3' UTR. It encodes isoform 1KL which is shorter, has a distinct internal amino acid, and has a distinct C-terminus, compared to isoform 1. Both variants Sgo1K and Sgo1L encode the same isoform (1KL).
- Source sequence(s)
-
AB187578, AB193065, BX494477
- Consensus CDS
-
CCDS2635.1
- Related
- ENSP00000411200.1, ENST00000452020.5
- Conserved Domains (2) summary
-
- pfam07557
Location:205 → 226
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_001199257.3 → NP_001186186.1 shugoshin 1 isoform 1J
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1J, PMID:15737064) uses an alternate splice site in its 3' coding region, lacks two exons in the 3' coding region, and contains an alternate 3' terminal exon compared to variant 1, resulting in a novel 3' coding region and distinct 3' UTR. It encodes isoform 1J which is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AB187578, AB193064, BX494477
- Consensus CDS
-
CCDS56243.1
- UniProtKB/Swiss-Prot
-
Q5FBB7
- Related
- ENSP00000413070.1, ENST00000443724.5
- Conserved Domains (1) summary
-
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
NM_138484.5 → NP_612493.1 shugoshin 1 isoform 1KL
Status: REVIEWED
- Description
- Transcript Variant: This variant (Sgo1L, PMID:15737064; also known as sSGO1, PMID:18331714 or C2) differs in the 5' UTR, lacks an alternate in-frame exon in its central coding region, and contains an alternate 3' terminal segment compared to variant 1, resulting in a novel 3' coding region and distinct 3' UTR. It encodes isoform 1KL which is shorter, has a distinct internal amino acid, and has a distinct C-terminus, compared to isoform 1. Both variants Sgo1K and Sgo1L encode the same isoform (1KL).
- Source sequence(s)
-
AB187578, AB193066, BX494477
- Consensus CDS
-
CCDS2635.1
- Related
- ENSP00000306581.2, ENST00000306698.6
- Conserved Domains (2) summary
-
- pfam07557
Location:205 → 226
- Shugoshin_C; Shugoshin C terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
RNA
-
NR_131179.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (14) differs in its 5' terminal exon and lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB193058, AB567657, AC099057, AF308299, BC032696, BX494477, BX648516
-
NR_131180.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (15) differs in its 5' terminal exon and lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB193058, AB567656, AC099057, AF308299, BC032696, BX494477, BX648516
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
20160593..20186886 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011533377.3 → XP_011531679.1 shugoshin 1 isoform X1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
- Conserved Domains (2) summary
-
- pfam07557
Location:474 → 496
- Shugoshin_C; Shugoshin C-terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
XM_047447486.1 → XP_047303442.1 shugoshin 1 isoform X2
-
XM_011533373.3 → XP_011531675.1 shugoshin 1 isoform X1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
- Conserved Domains (2) summary
-
- pfam07557
Location:474 → 496
- Shugoshin_C; Shugoshin C-terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
XM_011533376.3 → XP_011531678.1 shugoshin 1 isoform X1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
- Conserved Domains (2) summary
-
- pfam07557
Location:474 → 496
- Shugoshin_C; Shugoshin C-terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
XM_047447487.1 → XP_047303443.1 shugoshin 1 isoform X3
-
XM_011533375.3 → XP_011531677.1 shugoshin 1 isoform X1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
- Conserved Domains (2) summary
-
- pfam07557
Location:474 → 496
- Shugoshin_C; Shugoshin C-terminus
- pfam07558
Location:22 → 66
- Shugoshin_N; Shugoshin N-terminal coiled-coil region
-
XM_047447489.1 → XP_047303445.1 shugoshin 1 isoform X5
-
XM_047447490.1 → XP_047303446.1 shugoshin 1 isoform X5
-
XM_047447488.1 → XP_047303444.1 shugoshin 1 isoform X4
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
20164579..20190864 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054345327.1 → XP_054201302.1 shugoshin 1 isoform X1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
-
XM_054345326.1 → XP_054201301.1 shugoshin 1 isoform X1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
-
XM_054345328.1 → XP_054201303.1 shugoshin 1 isoform X2
-
XM_054345324.1 → XP_054201299.1 shugoshin 1 isoform X1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
-
XM_054345329.1 → XP_054201304.1 shugoshin 1 isoform X3
-
XM_054345325.1 → XP_054201300.1 shugoshin 1 isoform X1
- UniProtKB/Swiss-Prot
- Q588H5, Q5FBB4, Q5FBB5, Q5FBB6, Q5FBB7, Q5FBB8, Q8N579, Q8WVL0, Q9BVA8, Q9H275
-
XM_054345331.1 → XP_054201306.1 shugoshin 1 isoform X5
-
XM_054345330.1 → XP_054201305.1 shugoshin 1 isoform X4
-
XM_054345332.1 → XP_054201307.1 shugoshin 1 isoform X5