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    LOC105378137 uncharacterized LOC105378137 [ Homo sapiens (human) ]

    Gene ID: 105378137, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105378137
    Gene description
    uncharacterized LOC105378137
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105378137 in Genome Data Viewer
    Location:
    6q27
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (168225279..168226517, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (169566574..169567761, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (168625959..168627197, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168459591-168460092 Neighboring gene FERM domain containing 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168478883-168479604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168482533-168483533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168483534-168484533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168499911-168500412 Neighboring gene uncharacterized LOC107986548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168506640-168507627 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168518029-168518528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168521725-168522286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168525719-168526232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168529825-168530422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168551001-168551637 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168556329-168557328 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168557329-168558326 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168558327-168559325 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:168568969-168570168 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168580313-168581020 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:168590405-168591604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168594074-168594641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168594898-168595547 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168595548-168596196 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:168608743-168609449 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168609450-168610156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168615624-168616124 Neighboring gene uncharacterized LOC124901501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168631271-168631772 Neighboring gene uncharacterized LOC101929420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168648577-168649077

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134590.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL606970

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      168225279..168226517 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      169566574..169567761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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