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    LINC01507 long intergenic non-protein coding RNA 1507 [ Homo sapiens (human) ]

    Gene ID: 101927477, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01507provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1507provided by HGNC
    Primary source
    HGNC:HGNC:51189
    See related
    AllianceGenome:HGNC:51189
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    XLOC_000303
    Expression
    Biased expression in kidney (RPKM 1.1), gall bladder (RPKM 0.2) and 2 other tissues See more
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    Genomic context

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    See LINC01507 in Genome Data Viewer
    Location:
    9q21.31
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (79824530..80034555)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (91982914..92192899)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (82439445..82649470)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19969 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:82187809-82188421 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19971 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28491 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28489 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19974 Neighboring gene lncRNA regulator of Akt signaling associated with HCC and RCC Neighboring gene VISTA enhancer hs1078 Neighboring gene uncharacterized LOC124902329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:82267149-82267908 Neighboring gene VISTA enhancer hs1360 Neighboring gene TLE family member 4, transcriptional corepressor Neighboring gene NANOG hESC enhancer GRCh37_chr9:82346165-82346666 Neighboring gene NANOG hESC enhancer GRCh37_chr9:82380198-82380813 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:82449531-82450161 Neighboring gene ankyrin repeat domain-containing protein 36B-like Neighboring gene uncharacterized LOC105376101 Neighboring gene uncharacterized LOC105376100 Neighboring gene nuclear pore associated protein 1 pseudogene 6 Neighboring gene VISTA enhancer hs1163 Neighboring gene uncharacterized LOC105376099 Neighboring gene OCT4 hESC enhancer GRCh37_chr9:82664925-82665426 Neighboring gene VISTA enhancer hs1004 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:82757334-82758145 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:82771847-82772348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:82852704-82853204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:82853205-82853705 Neighboring gene uncharacterized LOC105376103 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:83015743-83016349 Neighboring gene nuclear pore associated protein 1 pseudogene 4 Neighboring gene MT-CO1 pseudogene 51

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Circulating lncRNAs associated with occurrence of colorectal cancer progression. Shi J, et al. Am J Cancer Res, 2015. PMID 26328256, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • DKFZp686L08114

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121212.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL160168, AL699629, BJ997919

    2. NR_121213.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks three exons and contains an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL160168, AL699629, CD708789

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      79824530..80034555
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      91982914..92192899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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