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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001358780.1 → NP_001345709.1 matrilin-2 isoform 1 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AC126028, AC133101, AC144632
- Consensus CDS
-
CCDS88747.1
- UniProtKB/Swiss-Prot
- E9QPK9, O08746, Q8R542
- UniProtKB/TrEMBL
-
Q99K64
- Related
- ENSMUSP00000154040.2, ENSMUST00000227759.2
- Conserved Domains (4) summary
-
- cd01475
Location:54 → 276
- vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
- pfam10393
Location:911 → 953
- Matrilin_ccoil; Trimeric coiled-coil oligomerization domain of matrilin
- pfam14670
Location:570 → 605
- FXa_inhibition; Coagulation Factor Xa inhibitory site
- cl00057
Location:652 → 892
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
-
NM_001427153.1 → NP_001414082.1 matrilin-2 isoform 3 precursor
Status: VALIDATED
- Source sequence(s)
-
AC133101, AC144632
- UniProtKB/TrEMBL
- A0A2I3BRF3, Q8C435
- Related
- ENSMUSP00000154572.2, ENSMUST00000228570.2
-
NM_016762.2 → NP_058042.2 matrilin-2 isoform 2 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
- Source sequence(s)
-
AK138211, AK163818, BY146293
- Consensus CDS
-
CCDS37056.1
- UniProtKB/TrEMBL
-
Q569V0
- Related
- ENSMUSP00000022947.6, ENSMUST00000022947.7
- Conserved Domains (4) summary
-
- cd01475
Location:54 → 276
- vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
- pfam10393
Location:892 → 934
- Matrilin_ccoil; Trimeric coiled-coil oligomerization domain of matrilin
- pfam14670
Location:570 → 605
- FXa_inhibition; Coagulation Factor Xa inhibitory site
- cl00057
Location:652 → 873
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000081.7 Reference GRCm39 C57BL/6J
- Range
-
34306827..34436388
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)