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    1700113H08Rik RIKEN cDNA 1700113H08 gene [ Mus musculus (house mouse) ]

    Gene ID: 76640, updated on 9-Dec-2024

    Summary

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    Official Symbol
    1700113H08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700113H08 geneprovided by MGI
    Primary source
    MGI:MGI:1923890
    See related
    Ensembl:ENSMUSG00000047129 AllianceGenome:MGI:1923890
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C12orf42 (chromosome 12 open reading frame 42). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 51.8) See more
    Orthologs
    human all
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    Genomic context

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    See 1700113H08Rik in Genome Data Viewer
    Location:
    10 C1; 10 43.5 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (86893910..87066461)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (87058046..87230599)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene stabilin 2 Neighboring gene ADNP homeobox 2 pseudogene Neighboring gene predicted gene 16271 Neighboring gene predicted gene, 53582 Neighboring gene STARR-seq mESC enhancer starr_27476 Neighboring gene STARR-positive B cell enhancer mm9_chr10:86566085-86566385 Neighboring gene STARR-positive B cell enhancer ABC_E2957 Neighboring gene STARR-seq mESC enhancer starr_27477 Neighboring gene RIKEN cDNA 4930555G07 gene Neighboring gene STARR-seq mESC enhancer starr_27479 Neighboring gene STARR-seq mESC enhancer starr_27480 Neighboring gene predicted gene, 23191

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C12orf42 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029685.1 → NP_083961.1  uncharacterized protein C12orf42 homolog

      Status: VALIDATED

      Source sequence(s)
      AC025501, AC123074
      Consensus CDS
      CCDS48660.1
      UniProtKB/TrEMBL
      E9Q9Q5
      Related
      ENSMUSP00000130852.2, ENSMUST00000169849.3
      Conserved Domains (1) summary
      pfam15380
      Location:71 → 324
      DUF4607; Domain of unknown function (DUF4607)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      86893910..87066461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156082.1 → XP_036011975.1  uncharacterized protein C12orf42 homolog isoform X2

      Conserved Domains (1) summary
      pfam15380
      Location:128 → 270
      DUF4607; Domain of unknown function (DUF4607)

    2. XM_036156084.1 → XP_036011977.1  uncharacterized protein C12orf42 homolog isoform X4

      UniProtKB/TrEMBL
      A0A087WR28
      Related
      ENSMUSP00000140447.2, ENSMUST00000189456.7
      Conserved Domains (1) summary
      pfam15380
      Location:62 → 204
      DUF4607; Domain of unknown function (DUF4607)

    3. XM_036156081.1 → XP_036011974.1  uncharacterized protein C12orf42 homolog isoform X1

      Conserved Domains (1) summary
      pfam15380
      Location:25 → 278
      DUF4607; Domain of unknown function (DUF4607)

    4. XM_036156083.1 → XP_036011976.1  uncharacterized protein C12orf42 homolog isoform X3

      Conserved Domains (1) summary
      pfam15380
      Location:25 → 242
      DUF4607; Domain of unknown function (DUF4607)

    5. XM_036156085.1 → XP_036011978.1  uncharacterized protein C12orf42 homolog isoform X5

      UniProtKB/TrEMBL
      Q9D9A9
      Related
      ENSMUSP00000141184.2, ENSMUST00000189775.2
      Conserved Domains (1) summary
      pfam15380
      Location:17 → 158
      DUF4607; Domain of unknown function (DUF4607)
    Nucleotide Protein Strain
    Heading Accession and Version

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