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    Selenbp1 selenium binding protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 20341, updated on 27-Nov-2024

    Summary

    Official Symbol
    Selenbp1provided by MGI
    Official Full Name
    selenium binding protein 1provided by MGI
    Primary source
    MGI:MGI:96825
    See related
    Ensembl:ENSMUSG00000068874 AllianceGenome:MGI:96825
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MTO; Lp56; Lpsb; SBP56
    Summary
    Predicted to enable methanethiol oxidase activity. Acts upstream of or within brown fat cell differentiation. Predicted to be located in fibrillar center. Is expressed in several structures, including gut; liver; lung; male reproductive gland or organ; and olfactory epithelium. Orthologous to human SELENBP1 (selenium binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in colon adult (RPKM 532.7), lung adult (RPKM 367.8) and 16 other tissues See more
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    Genomic context

    See Selenbp1 in Genome Data Viewer
    Location:
    3 F2.1; 3 40.74 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (94840394..94852069)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (94933083..94944758)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (3)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC18519

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables methanethiol oxidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables methanethiol oxidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables selenium binding TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within brown fat cell differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    methanethiol oxidase
    Names
    56 kDa selenium-binding protein
    SP56
    NP_033176.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009150.3NP_033176.2  methanethiol oxidase

      See identical proteins and their annotated locations for NP_033176.2

      Status: PROVISIONAL

      Source sequence(s)
      AC087062
      Consensus CDS
      CCDS38540.1
      UniProtKB/Swiss-Prot
      P17563, Q63836, Q8R1T6, Q91X87
      Related
      ENSMUSP00000088349.6, ENSMUST00000090839.12
      Conserved Domains (1) summary
      pfam05694
      Location:7472
      SBP56; 56kDa selenium binding protein (SBP56)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      94840394..94852069
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)