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    Slc35f4 solute carrier family 35, member F4 [ Mus musculus (house mouse) ]

    Gene ID: 75288, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Slc35f4provided by MGI
    Official Full Name
    solute carrier family 35, member F4provided by MGI
    Primary source
    MGI:MGI:1922538
    See related
    Ensembl:ENSMUSG00000021852 AllianceGenome:MGI:1922538
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930550L21Rik
    Summary
    Predicted to be located in membrane. Orthologous to human SLC35F4 (solute carrier family 35 member F4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 4.5), cortex adult (RPKM 3.0) and 4 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Slc35f4 in Genome Data Viewer
    Location:
    14 C1; 14 25.52 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (49535976..49763354, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (49298519..49525837, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene N(alpha)-acetyltransferase 30, NatC catalytic subunit Neighboring gene coiled-coil domain containing 198 Neighboring gene STARR-seq mESC enhancer starr_36630 Neighboring gene STARR-seq mESC enhancer starr_36631 Neighboring gene predicted gene, 52146 Neighboring gene STARR-seq mESC enhancer starr_36633 Neighboring gene predicted gene, 22116 Neighboring gene STARR-seq mESC enhancer starr_36634 Neighboring gene armadillo-like helical domain containing 4 Neighboring gene 60S ribosomal protein L24 pseudogene Neighboring gene predicted gene, 36146

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 35 member F4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029238.2 → NP_083514.1  solute carrier family 35 member F4

      Status: PROVISIONAL

      Source sequence(s)
      AK034308
      Consensus CDS
      CCDS26997.1
      UniProtKB/Swiss-Prot
      B8JJY8, Q8BL81, Q8BXC4, Q8BZK4, Q9JJG8
      UniProtKB/TrEMBL
      B2RSS2
      Related
      ENSMUSP00000073972.5, ENSMUST00000074368.11
      Conserved Domains (1) summary
      COG0697
      Location:238 → 438
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      49535976..49763354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030248088.1 → XP_030103948.1  solute carrier family 35 member F4 isoform X2

      Related
      ENSMUSP00000119007.2, ENSMUST00000138884.8

    2. XM_036158887.1 → XP_036014780.1  solute carrier family 35 member F4 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BZK4.1 GenPept UniProtKB/Swiss-Prot:Q8BZK4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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