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    Pdzd9 PDZ domain containing 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308954, updated on 9-Dec-2024

    Summary

    Official Symbol
    Pdzd9provided by RGD
    Official Full Name
    PDZ domain containing 9provided by RGD
    Primary source
    RGD:1560558
    See related
    EnsemblRapid:ENSRNOG00000016292 AllianceGenome:RGD:1560558
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    LRRGT00105
    Summary
    Orthologous to human PDZD9 (PDZ domain containing 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 294.7), Muscle (RPKM 191.4) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Pdzd9 in Genome Data Viewer
    Location:
    1q36
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (184619631..184646553, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (175188270..175217491, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (190584878..190604719, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor 116 like, pseudogene 36 Neighboring gene ankyrin repeat domain 62 like Neighboring gene ribosomal protein L36, pseudogene Neighboring gene large ribosomal subunit protein eL36-like Neighboring gene ubiquinol cytochrome c reductase core protein 2 Neighboring gene small nucleolar RNA U13 Neighboring gene modulator of smoothened Neighboring gene large ribosomal subunit protein uL10-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    PDZ domain-containing protein 9

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024777.3NP_001019948.3  PDZ domain-containing protein 9 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      Q6TUD9
      Related
      ENSRNOP00000072857.2, ENSRNOT00000079335.3
    2. NM_001412639.1NP_001399568.1  PDZ domain-containing protein 9 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6A801, F7EK64, Q4V8E3
      Related
      ENSRNOP00000049377.4, ENSRNOT00000044384.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      184619631..184646553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078219.2XP_038934147.1  PDZ domain-containing protein 9 isoform X7

      Conserved Domains (1) summary
      cd00992
      Location:34109
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    2. XM_063263136.1XP_063119206.1  PDZ domain-containing protein 9 isoform X8

    3. XM_039078215.2XP_038934143.1  PDZ domain-containing protein 9 isoform X3

      UniProtKB/TrEMBL
      A0A8I6A801
      Conserved Domains (1) summary
      cd00992
      Location:34109
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    4. XM_039078213.2XP_038934141.1  PDZ domain-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A801
      Conserved Domains (1) summary
      cd00992
      Location:34109
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    5. XM_039078218.2XP_038934146.1  PDZ domain-containing protein 9 isoform X6

    6. XM_039078214.2XP_038934142.1  PDZ domain-containing protein 9 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A801
      Related
      ENSRNOP00000087193.2, ENSRNOT00000099167.2
      Conserved Domains (1) summary
      cd00992
      Location:26101
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    7. XM_039078217.2XP_038934145.1  PDZ domain-containing protein 9 isoform X5

    8. XM_039078216.2XP_038934144.1  PDZ domain-containing protein 9 isoform X4

      UniProtKB/TrEMBL
      A0A8I6A801
      Conserved Domains (1) summary
      cd00992
      Location:479
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...