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    TMEM78 transmembrane protein 78 [ Homo sapiens (human) ]

    Gene ID: 677790, updated on 9-Dec-2024

    Summary

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    Official Symbol
    TMEM78provided by HGNC
    Official Full Name
    transmembrane protein 78provided by HGNC
    Primary source
    HGNC:HGNC:32307
    See related
    Ensembl:ENSG00000177800 AllianceGenome:HGNC:32307
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See TMEM78 in Genome Data Viewer
    Location:
    1q42.13
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (229249636..229251810)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (228628312..228630486)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (229385383..229387557)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229194589-229195089 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229195717-229196216 Neighboring gene iron-sulfur cluster assembly 1 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229223803-229224521 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229227240-229228172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229228173-229229104 Neighboring gene long intergenic non-protein coding RNA 2815 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229243991-229244514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229244515-229245036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229251653-229252154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229252155-229252654 Neighboring gene Sharpr-MPRA regulatory region 2560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229295511-229296011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229297904-229298404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229298405-229298905 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:229309691-229310255 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229313110-229314036 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229314037-229314963 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:229314964-229315890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2699 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229333469-229333968 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229338935-229339572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229341375-229341982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229356687-229357188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229357189-229357688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229360637-229361210 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229363801-229364526 Neighboring gene Sharpr-MPRA regulatory region 11146 Neighboring gene uncharacterized LOC102723935 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229388645-229389519 Neighboring gene uncharacterized LOC124904540 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:229389520-229390393 Neighboring gene RAB4A antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1925 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1926 Neighboring gene RAB4A, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel p53 regulator, C16ORF72/TAPR1, buffers against telomerase inhibition. Benslimane Y, et al. Aging Cell, 2021 Apr. PMID 33660365, Free PMC Article
    2. The DNA sequence and biological annotation of human chromosome 1. Gregory SG, et al. Nature, 2006 May 18. PMID 16710414
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Clone Names

    • FLJ40168

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_172940.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162595
      Related
      ENST00000323223.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      229249636..229251810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      228628312..228630486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001040079.1: Suppressed sequence

      Description
      NM_001040079.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5T7P6.1 GenPept UniProtKB/Swiss-Prot:Q5T7P6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials