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    Trav9d-4 T cell receptor alpha variable 9D-4 [ Mus musculus (house mouse) ]

    Gene ID: 667574, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Trav9d-4provided by MGI
    Official Full Name
    T cell receptor alpha variable 9D-4provided by MGI
    Primary source
    MGI:MGI:4889087
    See related
    IMGT/GENE-DB:TRAV9D-4; AllianceGenome:MGI:4889087
    Gene type
    other
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm13907
    Summary
    Orthologous to several human genes including TRAV8-3 (T cell receptor alpha variable 8-3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Trav9d-4 in Genome Data Viewer
    Location:
    14 C2; 14 27.17 cM
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (53220913..53221227)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (52983456..52983770)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene T cell receptor alpha chain Neighboring gene T cell receptor alpha variable 3D-3 Neighboring gene T cell receptor alpha variable 4D-4 Neighboring gene T cell receptor alpha variable 5D-4 Neighboring gene glutamate oxaloacetate transaminase 2, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure-function relationship among T-cell receptors specific for lysozyme peptides bound to Ab or Abm-12 molecules. Kobori JA, et al. Proc Natl Acad Sci U S A, 1992 Apr 1. PMID 1313573, Free PMC Article
    2. A third rearranged and expressed gene in a clone of cytotoxic T lymphocytes. Saito H, et al. Nature, 1984 Nov 1-7. PMID 6208487
    3. IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Giudicelli V, et al. Nucleic Acids Res, 2005 Jan 1. PMID 15608191, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • T cell receptor alpha variable region 9D-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007044.1 

      Range
      555990..556304
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      53220913..53221227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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