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    Rex1bd required for excision 1-B domain containing [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306348, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Rex1bdprovided by RGD
    Official Full Name
    required for excision 1-B domain containingprovided by RGD
    Primary source
    RGD:1566239
    See related
    EnsemblRapid:ENSRNOG00000019990 AllianceGenome:RGD:1566239
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566239
    Summary
    Orthologous to human REX1BD (required for excision 1-B domain containing). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 84.4), Muscle (RPKM 84.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rex1bd in Genome Data Viewer
    Location:
    16p14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (18956023..18958494)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (18922050..18924521)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (20671935..20674846)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 8 Neighboring gene KxDL motif containing 1 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 Neighboring gene cytokine receptor-like factor 1 Neighboring gene transmembrane protein 59-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    required for excision 1-B domain-containing protein
    Names
    uncharacterized protein C19orf60 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399434.1 → NP_001386363.1  required for excision 1-B domain-containing protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      A6KA44
      Related
      ENSRNOP00000091274.2, ENSRNOT00000095874.2
      Conserved Domains (1) summary
      pfam14966
      Location:32 → 126
      DNA_repr_REX1B; DNA repair REX1-B

    2. NM_001399435.1 → NP_001386364.1  required for excision 1-B domain-containing protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      Related
      ENSRNOP00000060266.2, ENSRNOT00000063780.3
      Conserved Domains (1) summary
      pfam14966
      Location:12 → 86
      DNA_repr_REX1B; DNA repair REX1-B

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      18956023..18958494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001107305.1: Suppressed sequence

      Description
      NM_001107305.1: This RefSeq was removed because currently there is insufficient support for the transcript.
    Nucleotide Protein Strain
    Heading Accession and Version

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