Tmem200c transmembrane protein 200C [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Tmem200cprovided by RGD
Official Full Name: transmembrane protein 200Cprovided by RGD
Primary source: RGD:1561734
See related: EnsemblRapid:ENSRNOG00000049880 AllianceGenome:RGD:1561734
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1561734
Summary: Predicted to be located in membrane. Orthologous to human TMEM200C (transmembrane protein 200C). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Brain (RPKM 57.6), Uterus (RPKM 16.7) and 7 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 9q38

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	9	NC_086027.1 (116252780..116258618)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	9	NC_051344.1 (108806063..108811901)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (117044533..117050371)

Chromosome 9 - NC_086027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH137665 (e-PCR)
- UniSTS:219752

RH143408 (e-PCR)
- UniSTS:232655

RH142905 (e-PCR)
- UniSTS:232152

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transmembrane protein 200C

Names: transmembrane protein TTMA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001251926.1 → NP_001238855.1 transmembrane protein 200C

Status: VALIDATED

Source sequence(s)

JAXUCZ010000009

UniProtKB/TrEMBL

M0R5E3

Related

ENSRNOP00000111081.1, ENSRNOT00000150611.1

Conserved Domains (1) summary

pfam10177
Location:14 → 208

DUF2371; uncharacterized conserved protein (DUF2371)