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    Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 [ Mus musculus (house mouse) ]

    Gene ID: 106064, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rimoc1provided by MGI
    Official Full Name
    RAB7A interacting MON1-CCZ1 complex subunit 1provided by MGI
    Primary source
    MGI:MGI:2146232
    See related
    Ensembl:ENSMUSG00000041935 AllianceGenome:MGI:2146232
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be involved in mitophagy. Predicted to be located in cytosol and nucleoplasm. Is expressed in several structures, including adipose tissue; ganglia; gut; hemolymphoid system; and male reproductive gland or organ. Orthologous to human RIMOC1 (RAB7A interacting MON1-CCZ1 complex subunit 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 24.9), whole brain E14.5 (RPKM 19.1) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Rimoc1 in Genome Data Viewer
    Location:
    15 A1; 15 1.84 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (4011517..4025228, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (3982035..3995746, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene exportin 4 pseudogene Neighboring gene STARR-seq mESC enhancer starr_37817 Neighboring gene F-box protein 4 Neighboring gene STARR-seq mESC enhancer starr_37819 Neighboring gene predicted gene 2093 Neighboring gene 3-oxoacid CoA transferase 1 antisense RNA Neighboring gene 3-oxoacid CoA transferase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in mitophagy ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in mitophagy ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RAB7A-interacting MON1-CCZ1 complex subunit 1
    Names
    UPF0600 protein C5orf51 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145930.3NP_666042.2  RAB7A-interacting MON1-CCZ1 complex subunit 1

      See identical proteins and their annotated locations for NP_666042.2

      Status: VALIDATED

      Source sequence(s)
      AC137902
      Consensus CDS
      CCDS27360.1
      UniProtKB/Swiss-Prot
      Q8BR90, Q91YM1
      Related
      ENSMUSP00000038476.9, ENSMUST00000046633.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      4011517..4025228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)