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    snx22.S sorting nexin 22 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398802, updated on 4-Jan-2025

    Summary

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    Official Symbol
    snx22.S
    Official Full Name
    sorting nexin 22 S homeolog
    Primary source
    Xenbase:XB-GENE-6255171
    Locus tag
    XELAEV_18020743mg
    See related
    EnsemblRapid:ENSXLAG00005008559 AllianceGenome:Xenbase:XB-GENE-6255171
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    snx22
    Summary
    Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasmic vesicle membrane. Orthologous to human SNX22 (sorting nexin 22). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See snx22.S in Genome Data Viewer
    Location:
    chromosome: 3S
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (58910893..58939452)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (57509825..57538644)

    Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 1 S homeolog Neighboring gene uncharacterized LOC121402169 Neighboring gene peptidylprolyl isomerase B S homeolog Neighboring gene PCNA clamp associated factor S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC68707

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasmic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    sorting nexin 22 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089739.1 → NP_001083208.1  sorting nexin 22 S homeolog

      Status: PROVISIONAL

      Source sequence(s)
      BC059986
      UniProtKB/TrEMBL
      A0A974HQZ4, Q6PAZ8
      Related
      ENSXLAP00005024749.1, ENSXLAT00005025458.1
      Conserved Domains (1) summary
      cd06880
      Location:2 → 112
      PX_SNX22; The phosphoinositide binding Phox Homology domain of Sorting Nexin 22

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      58910893..58939452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018254168.2 → XP_018109657.1  sorting nexin 22 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0UUA0
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials