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    wdr54.L WD repeat domain 54 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 779246, updated on 4-Jan-2025

    Summary

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    Official Symbol
    wdr54.L
    Official Full Name
    WD repeat domain 54 L homeolog
    Primary source
    Xenbase:XB-GENE-6252791
    Locus tag
    XELAEV_18003685mg
    See related
    EnsemblRapid:ENSXLAG00005006051 AllianceGenome:Xenbase:XB-GENE-6252791
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    wdr54
    Summary
    Is expressed in anatomical system; mesenchyme; and pharyngeal arch. [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See wdr54.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (655649..668126, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694845.1 (525335..538402)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene rhotekin-like Neighboring gene rho-related BTB domain-containing protein 2-like Neighboring gene uncharacterized LOC108704854 Neighboring gene uncharacterized LOC121401513 Neighboring gene uncharacterized LOC108704853 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene NOP56 ribonucleoprotein L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC154416

    General protein information

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    Preferred Names
    WD repeat domain 54 L homeolog
    Names
    D3Mm3e protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001096867.1 → NP_001090336.1  WD repeat domain 54 L homeolog

      See identical proteins and their annotated locations for NP_001090336.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123189
      UniProtKB/TrEMBL
      Q0IHE3
      Related
      ENSXLAP00005018098.1, ENSXLAT00005018394.1
      Conserved Domains (3) summary
      COG2319
      Location:132 → 331
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:169 → 210
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:161 → 305
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      655649..668126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018241545.2 → XP_018097034.1  WD repeat domain 54 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TXS1
      Related
      ENSXLAP00005018134.1, ENSXLAT00005018430.1
    Nucleotide Protein Strain
    Heading Accession and Version

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