cdx4.L caudal type homeobox 4 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: cdx4.L
Official Full Name: caudal type homeobox 4 L homeolog
Primary source: Xenbase:XB-GENE-482791
Locus tag: XELAEV_18038743mg
See related: EnsemblRapid:ENSXLAG00005013816 AllianceGenome:Xenbase:XB-GENE-482791
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: cad3; cdx4; Xcad3; Xcad-3; Xtcad3
Summary: Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in anatomical system; mesenchyme; pharyngeal arch; and primary germ layer. Orthologous to human CDX4 (caudal type homeobox 4). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

Location:: chromosome: 8L

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8L	NC_054385.1 (37935901..37942290)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8L	NC_030738.1 (24752667..24759003)

Chromosome 8L - NC_054385.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

A consensus Oct1 binding site is required for the activity of the Xenopus Cdx4 promoter.
Title: A consensus Oct1 binding site is required for the activity of the Xenopus Cdx4 promoter.

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: caudal type homeobox 4 L homeolog

Names: caudal type homeo box 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.