tmem150b.S transmembrane protein 150B S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tmem150b.S
Official Full Name: transmembrane protein 150B S homeolog
Primary source: Xenbase:XB-GENE-5873625
Locus tag: XELAEV_18037861mg
See related: EnsemblRapid:ENSXLAG00005011922 AllianceGenome:Xenbase:XB-GENE-5873625
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: tmem224; tmem150b; tmem150b-a; tmem150b-b
Summary: Predicted to act upstream of or within autophagy. Predicted to be located in plasma membrane. Orthologous to human TMEM150B (transmembrane protein 150B). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

Location:: chromosome: 7S

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	7S	NC_054384.1 (100070724..100085855, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	7S	NC_030737.1 (80937984..80953071, complement)

Chromosome 7S - NC_054384.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within autophagy	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in autophagosome membrane	IEA Inferred from Electronic Annotation more info
located_in endosome	IEA Inferred from Electronic Annotation more info
located_in endosome membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: modulator of macroautophagy TMEM150B-A

Names: transmembrane protein 150B-A; transmembrane protein 224-A; transmembrane protein LOC284417 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096024.2 → NP_001089493.1 modulator of macroautophagy TMEM150B-A

See identical proteins and their annotated locations for NP_001089493.1

Status: PROVISIONAL

Source sequence(s)

BC097726

UniProtKB/Swiss-Prot

Q4V7T7

UniProtKB/TrEMBL

A0A974CDL0, A0A974CH27

Related

ENSXLAP00005034936.1, ENSXLAT00005035819.1

Conserved Domains (1) summary

pfam10277
Location:4 → 204

Frag1; Frag1/DRAM/Sfk1 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

100070724..100085855 complement

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GenBank, FASTA, Sequence Viewer (Graphics)