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    abca3.S ATP binding cassette subfamily A member 3 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 101027308, updated on 27-Dec-2024

    Summary

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    Official Symbol
    abca3.S
    Official Full Name
    ATP binding cassette subfamily A member 3 S homeolog
    Primary source
    Xenbase:XB-GENE-6487136
    Locus tag
    XELAEV_18047681mg
    See related
    EnsemblRapid:ENSXLAG00005008216 AllianceGenome:Xenbase:XB-GENE-6487136
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    abca3
    Summary
    Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in pulmonary alveolar proteinosis. Orthologous to human ABCA3 (ATP binding cassette subfamily A member 3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See abca3.S in Genome Data Viewer
    Location:
    chromosome: 9_10S
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (100089932..100133464, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (93461696..93505617, complement)

    Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene RNA binding protein S1, serine-rich domain S homeolog Neighboring gene MAPK regulated corepressor interacting protein 2 S homeolog Neighboring gene Jupiter microtubule associated homolog 2 S homeolog Neighboring gene mitochondrial ribosomal protein S34 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase ABCA3
    Names
    ATP-binding cassette sub-family A member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      100089932..100133464 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018239226.2 → XP_018094715.1  phospholipid-transporting ATPase ABCA3

      UniProtKB/TrEMBL
      A0A1L8EQN4, A0A974H1R9
      Related
      ENSXLAP00005023642.1, ENSXLAT00005024347.1
    Nucleotide Protein Strain
    Heading Accession and Version

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