cnn1.S calponin S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: cnn1.S
Official Full Name: calponin S homeolog
Primary source: Xenbase:XB-GENE-17346347
Locus tag: XELAEV_18000762mg
See related: EnsemblRapid:ENSXLAG00005010392 AllianceGenome:Xenbase:XB-GENE-17346347
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: clpH3; XclpH3
Summary: Predicted to enable actin binding activity and calmodulin binding activity. Predicted to act upstream of or within actomyosin structure organization. Orthologous to human CNN1 (calponin 1). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

Location:: chromosome: 3S

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3S	NC_054376.1 (124540638..124556195)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	Unplaced Scaffold	NW_016694811.1 (988239..1003990)

Chromosome 3S - NC_054376.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info
enables calmodulin binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within actomyosin structure organization	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC398867

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089856.1 → NP_001083325.1 uncharacterized protein LOC398867

See identical proteins and their annotated locations for NP_001083325.1

Status: PREDICTED

Source sequence(s)

BC060387

UniProtKB/TrEMBL

Q6PAB2

Related

ENSXLAP00005030646.1, ENSXLAT00005031403.1

Conserved Domains (3) summary

COG5199
Location:17 → 177

SCP1; Calponin [Cytoskeleton]

pfam00307
Location:30 → 126

CH; Calponin homology (CH) domain

pfam00402
Location:163 → 186

Calponin; Calponin family repeat