OR1J2 olfactory receptor family 1 subfamily J member 2 [Homo sapiens (human)] - Gene

Summary

Official Symbol: OR1J2provided by HGNC
Official Full Name: olfactory receptor family 1 subfamily J member 2provided by HGNC
Primary source: HGNC:HGNC:8209
See related: Ensembl:ENSG00000197233 AllianceGenome:HGNC:8209
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: HSA5; HG152; OR1J3; OR1J5; OR9-19; OST044
Summary: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Expression: Low expression observed in reference dataset See more
Orthologs: all
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Genomic context

Location:: 9q33.2

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	9	NC_000009.12 (122447433..122580427)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	9	NC_060933.1 (134644883..134777736)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	9	NC_000009.11 (125273081..125274022)

Chromosome 9 - NC_000009.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables G protein-coupled receptor activity	IEA Inferred from Electronic Annotation more info
enables olfactory receptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in G protein-coupled receptor signaling pathway	IEA Inferred from Electronic Annotation more info
involved_in detection of chemical stimulus involved in sensory perception of smell	IEA Inferred from Electronic Annotation more info
involved_in signal transduction	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: olfactory receptor 1J2

Names: HTPCRX15; olfactory receptor 1J3; olfactory receptor 1J5; olfactory receptor OR9-19; olfactory receptor, family 1, subfamily J, member 3; olfactory receptor, family 1, subfamily J, member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_054107.1 → NP_473448.1 olfactory receptor 1J2

See identical proteins and their annotated locations for NP_473448.1

Status: PROVISIONAL

Source sequence(s)

AL359636

Consensus CDS

CCDS35121.1

UniProtKB/Swiss-Prot

A3KFL9, Q6IF14, Q8NGS2, Q96R90, Q9NZP1

UniProtKB/TrEMBL

A0A126GW18, B3KVN8

Related

ENSP00000335575.5, ENST00000335302.5

Conserved Domains (1) summary

cd15918
Location:26 → 294

7tmA_OR1_7-like; olfactory receptor families 1, 7, and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000009.12 Reference GRCh38.p14 Primary Assembly

Range

122447433..122580427

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_024447517.2 → XP_024303285.1 olfactory receptor 1J2 isoform X1

UniProtKB/Swiss-Prot

A3KFL9, Q6IF14, Q8NGS2, Q96R90, Q9NZP1

UniProtKB/TrEMBL

A0A126GW18, B3KVN8

Conserved Domains (1) summary

cd15918
Location:26 → 294

7tmA_OR1_7-like; olfactory receptor families 1, 7, and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors
XM_024447516.2 → XP_024303284.1 olfactory receptor 1J2 isoform X1

UniProtKB/Swiss-Prot

A3KFL9, Q6IF14, Q8NGS2, Q96R90, Q9NZP1

UniProtKB/TrEMBL

A0A126GW18, B3KVN8

Conserved Domains (1) summary

cd15918
Location:26 → 294

7tmA_OR1_7-like; olfactory receptor families 1, 7, and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors