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    VPS33B VPS33B late endosome and lysosome associated [ Bos taurus (domestic cattle) ]

    Gene ID: 526538, updated on 27-Dec-2024

    Summary

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    Official Symbol
    VPS33Bprovided by VGNC
    Official Full Name
    VPS33B late endosome and lysosome associatedprovided by VGNC
    Primary source
    VGNC:VGNC:36817
    See related
    Ensembl:ENSBTAG00000000026
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See VPS33B in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (21647388..21672877)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene calcium and integrin binding 1 Neighboring gene GDP-D-glucose phosphorylase 1 Neighboring gene neugrin, neurite outgrowth associated Neighboring gene protein regulator of cytokinesis 1 Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA glycine (anticodon CCC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC137868

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CORVET complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 33B
    Names
    vacuolar protein sorting 33B)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046284.1 → NP_001039749.1  vacuolar protein sorting-associated protein 33B

      See identical proteins and their annotated locations for NP_001039749.1

      Status: PROVISIONAL

      Source sequence(s)
      BC113354
      UniProtKB/Swiss-Prot
      A1L527, Q2HJ18
      UniProtKB/TrEMBL
      A0AAA9S7D0
      Related
      ENSBTAP00000084664.1, ENSBTAT00000128104.1
      Conserved Domains (1) summary
      pfam00995
      Location:37 → 605
      Sec1; Sec1 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      21647388..21672877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015459184.3 → XP_015314670.1  vacuolar protein sorting-associated protein 33B isoform X1

      UniProtKB/TrEMBL
      A0AAA9S7D0
      Related
      ENSBTAP00000079815.1, ENSBTAT00000106589.1
      Conserved Domains (1) summary
      pfam00995
      Location:37 → 405
      Sec1; Sec1 family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2HJ18.1 GenPept UniProtKB/Swiss-Prot:Q2HJ18

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials