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    NOP2 NOP2 nucleolar protein [ Bos taurus (domestic cattle) ]

    Gene ID: 541169, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NOP2provided by VGNC
    Official Full Name
    NOP2 nucleolar proteinprovided by VGNC
    Primary source
    VGNC:VGNC:32167
    See related
    BGD:BT28762; Ensembl:ENSBTAG00000014733
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    NOL1
    Orthologs
    human mouse all
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    Genomic context

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    See NOP2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (103848170..103856942)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 4 Neighboring gene small Cajal body-specific RNA 11 Neighboring gene uncharacterized LOC112446759 Neighboring gene intermediate filament family orphan 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC165889

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA (cytosine-C5-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    28S rRNA (cytosine(4447)-C(5))-methyltransferase
    Names
    NOP2 nucleolar protein homolog
    nucleolar protein 1, 120kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102257.1 → NP_001095727.1  28S rRNA (cytosine(4447)-C(5))-methyltransferase

      See identical proteins and their annotated locations for NP_001095727.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151441
      UniProtKB/TrEMBL
      A6QQS8, F1N3G2
      Related
      ENSBTAP00000019607.5, ENSBTAT00000019607.6
      Conserved Domains (4) summary
      TIGR00446
      Location:313 → 587
      nop2p; NOL1/NOP2/sun family putative RNA methylase
      TIGR02223
      Location:592 → 775
      ftsN; cell division protein FtsN
      pfam01189
      Location:378 → 586
      Nol1_Nop2_Fmu; 16S rRNA methyltransferase RsmF
      pfam17125
      Location:300 → 374
      Methyltr_RsmF_N; N-terminal domain of 16S rRNA methyltransferase RsmF

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      103848170..103856942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010805593.4 → XP_010803895.1  28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1

      See identical proteins and their annotated locations for XP_010803895.1

      UniProtKB/TrEMBL
      F1N3G2
      Conserved Domains (4) summary
      TIGR00446
      Location:313 → 587
      nop2p; NOL1/NOP2/sun family putative RNA methylase
      TIGR02223
      Location:592 → 775
      ftsN; cell division protein FtsN
      pfam01189
      Location:378 → 586
      Nol1_Nop2_Fmu; 16S rRNA methyltransferase RsmF
      pfam17125
      Location:300 → 374
      Methyltr_RsmF_N; N-terminal domain of 16S rRNA methyltransferase RsmF
    Nucleotide Protein Strain
    Heading Accession and Version

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