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    RPGR retinitis pigmentosa GTPase regulator [ Bos taurus (domestic cattle) ]

    Gene ID: 513263, updated on 30-Jan-2025

    Summary

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    Gene symbol
    RPGR
    Gene description
    retinitis pigmentosa GTPase regulator
    See related
    EnsemblRapid:ENSBTAG00070033491
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RPGR in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (104948556..105023306)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene ferritin light chain-like Neighboring gene ornithine transcarbamylase Neighboring gene sushi repeat containing protein X-linked Neighboring gene peptidyl-prolyl cis-trans isomerase D-like Neighboring gene ferritin heavy chain-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. RPGR-ORF15, which is mutated in retinitis pigmentosa, associates with SMC1, SMC3, and microtubule transport proteins. Khanna H, et al. J Biol Chem, 2005 Sep 30. PMID 16043481, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    X-linked retinitis pigmentosa GTPase regulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      104948556..105023306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059883814.1 → XP_059739797.1  X-linked retinitis pigmentosa GTPase regulator isoform X2

      UniProtKB/TrEMBL
      A0AAA9T9S4

    2. XM_024988444.2 → XP_024844212.1  X-linked retinitis pigmentosa GTPase regulator isoform X1

      UniProtKB/TrEMBL
      A0AAA9S9R1, A0AAA9T9S4
      Related
      ENSBTAP00070046178.1, ENSBTAT00070075673.1
      Conserved Domains (2) summary
      cl27202
      Location:561 → 803
      Mpp10; Mpp10 protein
      cl27697
      Location:90 → 405
      RCC1; Regulator of chromosome condensation (RCC1) repeat

    3. XM_024988447.2 → XP_024844215.1  X-linked retinitis pigmentosa GTPase regulator isoform X4

      UniProtKB/TrEMBL
      F1MD33
      Conserved Domains (1) summary
      cl27697
      Location:90 → 405
      RCC1; Regulator of chromosome condensation (RCC1) repeat

    4. XM_024988446.2 → XP_024844214.1  X-linked retinitis pigmentosa GTPase regulator isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MB28, A0AAA9T229
      Related
      ENSBTAP00070046162.1, ENSBTAT00070075643.1
      Conserved Domains (1) summary
      cl27697
      Location:90 → 405
      RCC1; Regulator of chromosome condensation (RCC1) repeat

    RNA

    1. XR_009493597.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001098383.1: Suppressed sequence

      Description
      NM_001098383.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: RPGR (GeneID:6103).
    Nucleotide Protein Strain
    Heading Accession and Version

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