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    GOLGA2 golgin A2 [ Bos taurus (domestic cattle) ]

    Gene ID: 508805, updated on 27-Dec-2024

    Summary

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    Gene symbol
    GOLGA2
    Gene description
    golgin A2
    See related
    Ensembl:ENSBTAG00000011317
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GOLGA2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (98866665..98883294, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene dynamin 1 Neighboring gene microRNA mir-3604-2 Neighboring gene microRNA mir-199b Neighboring gene microRNA mir-3154 Neighboring gene uncharacterized LOC132346638 Neighboring gene SWI5 homologous recombination repair protein Neighboring gene TruB pseudouridine synthase family member 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi cis cisterna IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cis-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    golgin subfamily A member 2
    Names
    golgi autoantigen, golgin subfamily a, 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192195.1 → NP_001179124.1  golgin subfamily A member 2

      Status: VALIDATED

      Source sequence(s)
      BC103146, BF601745, DT815502, DV883843, DV935000, DY087562, EE235324
      UniProtKB/TrEMBL
      A0A3Q1LTM9
      Related
      ENSBTAP00000063838.1, ENSBTAT00000084718.1
      Conserved Domains (5) summary
      pfam09755
      Location:203 → 504
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
      pfam12526
      Location:59 → 130
      DUF3729; Protein of unknown function (DUF3729)
      pfam15070
      Location:414 → 1032
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
      cl11423
      Location:240 → 337
      VirB9_CagX_TrbG; VirB9/CagX/TrbG, a component of the type IV secretion system
      cl19219
      Location:340 → 434
      DUF342; Protein of unknown function (DUF342)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      98866665..98883294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010810411.4 → XP_010808713.1  golgin subfamily A member 2 isoform X8

      UniProtKB/TrEMBL
      A0AAA9TFZ7
      Related
      ENSBTAP00000095104.1, ENSBTAT00000134334.1
      Conserved Domains (3) summary
      pfam15070
      Location:348 → 966
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
      cl11423
      Location:174 → 271
      VirB9_CagX_TrbG; VirB9/CagX/TrbG, a component of the type IV secretion system
      cl19219
      Location:274 → 368
      DUF342; Protein of unknown function (DUF342)

    2. XM_024998471.2 → XP_024854239.1  golgin subfamily A member 2 isoform X7

      Conserved Domains (2) summary
      pfam15070
      Location:360 → 978
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
      cl25732
      Location:187 → 458
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_024998470.2 → XP_024854238.1  golgin subfamily A member 2 isoform X6

      Conserved Domains (3) summary
      pfam15070
      Location:374 → 992
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
      cl25732
      Location:194 → 537
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26247
      Location:25 → 236
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    4. XM_005213238.5 → XP_005213295.1  golgin subfamily A member 2 isoform X2

      UniProtKB/TrEMBL
      E1BLT0
      Related
      ENSBTAP00000015044.5, ENSBTAT00000015044.7
      Conserved Domains (3) summary
      pfam15070
      Location:387 → 1005
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
      cl11423
      Location:213 → 310
      VirB9_CagX_TrbG; VirB9/CagX/TrbG, a component of the type IV secretion system
      cl19219
      Location:313 → 407
      DUF342; Protein of unknown function (DUF342)

    5. XM_005213240.5 → XP_005213297.1  golgin subfamily A member 2 isoform X3

      Conserved Domains (3) summary
      pfam15070
      Location:375 → 993
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
      cl11423
      Location:201 → 298
      VirB9_CagX_TrbG; VirB9/CagX/TrbG, a component of the type IV secretion system
      cl19219
      Location:301 → 395
      DUF342; Protein of unknown function (DUF342)

    6. XM_005213237.5 → XP_005213294.1  golgin subfamily A member 2 isoform X5

      UniProtKB/TrEMBL
      A0AAA9STC8
      Related
      ENSBTAP00000089679.1, ENSBTAT00000127364.1
      Conserved Domains (4) summary
      pfam12526
      Location:59 → 130
      DUF3729; Protein of unknown function (DUF3729)
      pfam15070
      Location:387 → 1005
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
      cl11423
      Location:213 → 310
      VirB9_CagX_TrbG; VirB9/CagX/TrbG, a component of the type IV secretion system
      cl19219
      Location:313 → 407
      DUF342; Protein of unknown function (DUF342)

    7. XM_059891136.1 → XP_059747119.1  golgin subfamily A member 2 isoform X4

    8. XM_010810410.4 → XP_010808712.2  golgin subfamily A member 2 isoform X1

      Related
      ENSBTAP00000061331.1, ENSBTAT00000084496.2
    Nucleotide Protein Strain
    Heading Accession and Version

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