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    CLPTM1L CLPTM1 like [ Bos taurus (domestic cattle) ]

    Gene ID: 506200, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CLPTM1Lprovided by VGNC
    Official Full Name
    CLPTM1 likeprovided by VGNC
    Primary source
    VGNC:VGNC:27461
    See related
    Ensembl:ENSBTAG00000001329
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    CRR9p
    Orthologs
    human mouse all
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    Genomic context

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    See CLPTM1L in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (71117500..71129899)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343261 Neighboring gene lysophosphatidylcholine acyltransferase 1 Neighboring gene solute carrier family 6 member 3 Neighboring gene telomerase reverse transcriptase Neighboring gene solute carrier family 6 member 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC148642

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipid scramblase CLPTM1L
    Names
    CLPTM1-like protein
    Cleft lip and palate transmembrane protein 1-like protein
    cisplatin resistance related protein CRR9p
    cisplatin resistance-related protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082426.2 → NP_001075895.1  lipid scramblase CLPTM1L

      See identical proteins and their annotated locations for NP_001075895.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133589
      UniProtKB/Swiss-Prot
      A2VE61
      UniProtKB/TrEMBL
      F1MQ41
      Related
      ENSBTAP00000001754.6, ENSBTAT00000001754.7
      Conserved Domains (1) summary
      pfam05602
      Location:22 → 421
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      71117500..71129899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005221660.5 → XP_005221717.1  lipid scramblase CLPTM1L isoform X1

      UniProtKB/TrEMBL
      F1MQ41
      Conserved Domains (1) summary
      pfam05602
      Location:22 → 422
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2VE61.1 GenPept UniProtKB/Swiss-Prot:A2VE61

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials