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    POGZ pogo transposable element derived with ZNF domain [ Bos taurus (domestic cattle) ]

    Gene ID: 535254, updated on 1-Jan-2025

    Summary

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    Official Symbol
    POGZprovided by VGNC
    Official Full Name
    pogo transposable element derived with ZNF domainprovided by VGNC
    Primary source
    VGNC:VGNC:33109
    See related
    BGD:BT27137; Ensembl:ENSBTAG00000021289
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See POGZ in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (19322588..19369633)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene cingulin Neighboring gene uncharacterized LOC132344837 Neighboring gene proteasome 20S subunit beta 4 Neighboring gene single-stranded DNA-binding protein 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. Jann OC, et al. BMC Genomics, 2006 Nov 6. PMID 17087818, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pogo transposable element with ZNF domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163190.2 → NP_001156662.1  pogo transposable element with ZNF domain

      See identical proteins and their annotated locations for NP_001156662.1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000003
      UniProtKB/TrEMBL
      A0AAA9T0A2
      Conserved Domains (5) summary
      smart00674
      Location:895 → 956
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:436 → 457
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:370 → 403
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1030 → 1154
      rve; Integrase core domain
      cl27427
      Location:287 → 336
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      19322588..19369633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884710.1 → XP_059740693.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0AAA9T0A2, A0AAA9TBM0

    2. XM_005203913.5 → XP_005203970.1  pogo transposable element with ZNF domain isoform X1

      See identical proteins and their annotated locations for XP_005203970.1

      UniProtKB/TrEMBL
      A0AAA9T0A2, A0AAA9TBM0
      Related
      ENSBTAP00000094077.1, ENSBTAT00000122093.1
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:562 → 583
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1156 → 1280
      rve; Integrase core domain
      cl26464
      Location:271 → 453
      Atrophin-1; Atrophin-1 family

    3. XM_005203918.5 → XP_005203975.1  pogo transposable element with ZNF domain isoform X3

      See identical proteins and their annotated locations for XP_005203975.1

      UniProtKB/TrEMBL
      A0AAA9T0A2, E1BPS7
      Related
      ENSBTAP00000033789.5, ENSBTAT00000033883.6
      Conserved Domains (5) summary
      smart00674
      Location:948 → 1009
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:489 → 510
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:423 → 456
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1083 → 1207
      rve; Integrase core domain
      cl27427
      Location:340 → 389
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    4. XM_005203916.5 → XP_005203973.1  pogo transposable element with ZNF domain isoform X2

      See identical proteins and their annotated locations for XP_005203973.1

      UniProtKB/TrEMBL
      A0AAA9T0A2
      Conserved Domains (5) summary
      smart00674
      Location:968 → 1029
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:509 → 530
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:443 → 476
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1103 → 1227
      rve; Integrase core domain
      cl26464
      Location:218 → 400
      Atrophin-1; Atrophin-1 family

    5. XM_005203919.5 → XP_005203976.1  pogo transposable element with ZNF domain isoform X4

      UniProtKB/TrEMBL
      A0AAA9T0A2
      Conserved Domains (5) summary
      smart00674
      Location:902 → 963
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:443 → 464
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:377 → 410
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam06121
      Location:88 → 246
      DUF959; Domain of Unknown Function (DUF959)
      cl21549
      Location:1037 → 1161
      rve; Integrase core domain

    6. XM_059884712.1 → XP_059740695.1  pogo transposable element with ZNF domain isoform X5

      UniProtKB/TrEMBL
      A0AAA9T0A2
    Nucleotide Protein Strain
    Heading Accession and Version

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