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    SEMA4F ssemaphorin 4F [ Bos taurus (domestic cattle) ]

    Gene ID: 530018, updated on 29-Jan-2025

    Summary

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    Official Symbol
    SEMA4Fprovided by VGNC
    Official Full Name
    ssemaphorin 4Fprovided by VGNC
    Primary source
    VGNC:VGNC:34437
    See related
    Ensembl:ENSBTAG00000006989
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA4F in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (9961643..9986253, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL33-like Neighboring gene uncharacterized LOC112448867 Neighboring gene meiosis 1 associated protein Neighboring gene uncharacterized LOC132346545 Neighboring gene histone H2B type 1-H-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC160077

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-4F
    Names
    sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      9961643..9986253 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005212466.5 → XP_005212523.1  semaphorin-4F isoform X3

      See identical proteins and their annotated locations for XP_005212523.1

      UniProtKB/TrEMBL
      A0AAA9ST99
      Conserved Domains (3) summary
      smart00423
      Location:378 → 429
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:436 → 515
      Ig; Immunoglobulin domain
      cl15693
      Location:35 → 377
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    2. XM_024999359.2 → XP_024855127.1  semaphorin-4F isoform X4

      UniProtKB/TrEMBL
      A0AAA9T2H4
      Related
      ENSBTAP00070042082.1, ENSBTAT00070068963.1
      Conserved Domains (3) summary
      smart00423
      Location:358 → 409
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:416 → 495
      Ig; Immunoglobulin domain
      cl15693
      Location:53 → 357
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    3. XM_005212465.5 → XP_005212522.1  semaphorin-4F isoform X2

      See identical proteins and their annotated locations for XP_005212522.1

      UniProtKB/TrEMBL
      A0AAA9ST99, F6RI62
      Related
      ENSBTAP00070042063.1, ENSBTAT00070068923.1
      Conserved Domains (3) summary
      smart00423
      Location:480 → 531
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:538 → 617
      Ig; Immunoglobulin domain
      cl15693
      Location:53 → 479
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    4. XM_003586617.6 → XP_003586665.1  semaphorin-4F isoform X1

      See identical proteins and their annotated locations for XP_003586665.1

      UniProtKB/TrEMBL
      A0AAA9ST99, E1BF41
      Related
      ENSBTAP00070042043.1, ENSBTAT00070068884.1
      Conserved Domains (3) summary
      cd11261
      Location:53 → 512
      Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
      smart00423
      Location:513 → 564
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:571 → 650
      Ig; Immunoglobulin domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001102126.1: Suppressed sequence

      Description
      NM_001102126.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: SEMA4F (GeneID:10505).
    Nucleotide Protein Strain
    Heading Accession and Version

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