U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    R3HDM2 R3H domain containing 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 613499, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    R3HDM2provided by VGNC
    Official Full Name
    R3H domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:106430
    See related
    Ensembl:ENSBTAG00000018361
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See R3HDM2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (56031460..56191525)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene inhibin subunit beta E Neighboring gene inhibin subunit beta C Neighboring gene SH3 and cysteine rich domain 3 Neighboring gene NDUFA4 mitochondrial complex associated like 2 Neighboring gene serine hydroxymethyltransferase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC142849

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    R3H domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078034.1 → NP_001071502.1  R3H domain-containing protein 2

      Status: PROVISIONAL

      Source sequence(s)
      BC126608
      UniProtKB/Swiss-Prot
      A0JNC2
      UniProtKB/TrEMBL
      A0AAA9S3X5
      Related
      ENSBTAP00000076816.1, ENSBTAT00000126663.1
      Conserved Domains (3) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:463 → 721
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:250 → 303
      SUZ; SUZ domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      56031460..56191525
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886670.1 → XP_059742653.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    2. XM_059886677.1 → XP_059742660.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    3. XM_059886678.1 → XP_059742661.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    4. XM_059886672.1 → XP_059742655.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    5. XM_059886674.1 → XP_059742657.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    6. XM_059886676.1 → XP_059742659.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    7. XM_059886675.1 → XP_059742658.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    8. XM_024992122.2 → XP_024847890.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5
      Conserved Domains (3) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:486 → 784
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:250 → 303
      SUZ; SUZ domain

    9. XM_059886687.1 → XP_059742670.1  R3H domain-containing protein 2 isoform X7

      UniProtKB/TrEMBL
      A0AAA9S3X5

    10. XM_024992126.2 → XP_024847894.1  R3H domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A0AAA9S3X5
      Conserved Domains (3) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:465 → 773
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:250 → 303
      SUZ; SUZ domain

    11. XM_024992134.2 → XP_024847902.1  R3H domain-containing protein 2 isoform X9

      UniProtKB/TrEMBL
      A0AAA9S3X5
      Conserved Domains (3) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:481 → 739
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:250 → 303
      SUZ; SUZ domain

    12. XM_059886684.1 → XP_059742667.1  R3H domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0AAA9S3X5

    13. XM_024992130.2 → XP_024847898.1  R3H domain-containing protein 2 isoform X5

      UniProtKB/TrEMBL
      A0AAA9S3X5, A0AAA9TEC1
      Related
      ENSBTAP00000096501.1, ENSBTAT00000103173.1
      Conserved Domains (3) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:447 → 755
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:250 → 303
      SUZ; SUZ domain

    14. XM_059886686.1 → XP_059742669.1  R3H domain-containing protein 2 isoform X6

      UniProtKB/TrEMBL
      A0AAA9TJW6

    15. XM_024992132.2 → XP_024847900.1  R3H domain-containing protein 2 isoform X8

      UniProtKB/TrEMBL
      A0AAA9T476, A0AAA9TJW6
      Conserved Domains (2) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:433 → 741
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    16. XM_024992139.2 → XP_024847907.1  R3H domain-containing protein 2 isoform X14

      UniProtKB/TrEMBL
      A0AAA9TJW6
      Conserved Domains (2) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:449 → 707
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    17. XM_059886688.1 → XP_059742671.1  R3H domain-containing protein 2 isoform X10

      UniProtKB/TrEMBL
      A0AAA9TJW6

    18. XM_024992135.2 → XP_024847903.1  R3H domain-containing protein 2 isoform X11

      UniProtKB/TrEMBL
      A0AAA9TJW6
      Conserved Domains (2) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:415 → 723
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    19. XM_024992140.2 → XP_024847908.1  R3H domain-containing protein 2 isoform X15

      UniProtKB/TrEMBL
      A0AAA9TJW6
      Conserved Domains (2) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:431 → 689
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    20. XM_059886685.1 → XP_059742668.1  R3H domain-containing protein 2 isoform X4

      UniProtKB/TrEMBL
      A0AAA9S3X5

    21. XM_024992137.2 → XP_024847905.1  R3H domain-containing protein 2 isoform X13

      UniProtKB/TrEMBL
      A0AAA9S3X5
      Conserved Domains (3) summary
      cd02642
      Location:164 → 209
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:461 → 719
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:230 → 283
      SUZ; SUZ domain

    22. XM_059886681.1 → XP_059742664.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    23. XM_059886682.1 → XP_059742665.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    24. XM_059886673.1 → XP_059742656.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    25. XM_059886679.1 → XP_059742662.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    26. XM_059886680.1 → XP_059742663.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    27. XM_059886671.1 → XP_059742654.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    28. XM_059886689.1 → XP_059742672.1  R3H domain-containing protein 2 isoform X12

      UniProtKB/Swiss-Prot
      A0JNC2
      UniProtKB/TrEMBL
      A0AAA9S3X5

    29. XM_024992133.2 → XP_024847901.1  R3H domain-containing protein 2 isoform X8

      UniProtKB/TrEMBL
      A0AAA9T476, A0AAA9TJW6
      Related
      ENSBTAP00000093594.1, ENSBTAT00000132037.1
      Conserved Domains (2) summary
      cd02642
      Location:168 → 229
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:433 → 741
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    30. XM_059886683.1 → XP_059742666.1  R3H domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S3X5

    31. XM_059886690.1 → XP_059742673.1  R3H domain-containing protein 2 isoform X16

      UniProtKB/TrEMBL
      A0AAA9S3X5

    32. XM_059886691.1 → XP_059742674.1  R3H domain-containing protein 2 isoform X17

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JNC2.1 GenPept UniProtKB/Swiss-Prot:A0JNC2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.