U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TMEM80 transmembrane protein 80 [ Bos taurus (domestic cattle) ]

    Gene ID: 613612, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TMEM80provided by VGNC
    Official Full Name
    transmembrane protein 80provided by VGNC
    Primary source
    VGNC:VGNC:36113
    See related
    BGD:BT16454; Ensembl:ENSBTAG00000063314
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TMEM80 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (50632609..50638870, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101903832 Neighboring gene EPS8 like 2 Neighboring gene uncharacterized LOC112444919 Neighboring gene DEAF1 transcription factor Neighboring gene microRNA mir-2410 Neighboring gene dopamine receptor D4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC148372

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in non-motile cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ciliary transition zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein 80

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080312.2 → NP_001073781.1  transmembrane protein 80

      See identical proteins and their annotated locations for NP_001073781.1

      Status: PROVISIONAL

      Source sequence(s)
      BC126790
      UniProtKB/Swiss-Prot
      A1A4P6
      UniProtKB/TrEMBL
      A0AAA9T633
      Conserved Domains (1) summary
      pfam09799
      Location:24 → 127
      Transmemb_17; Predicted membrane protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50632609..50638870 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059883005.1 → XP_059738988.1  transmembrane protein 80 isoform X1

      UniProtKB/Swiss-Prot
      A1A4P6
      UniProtKB/TrEMBL
      A0AAA9T633

    2. XM_015461365.3 → XP_015316851.1  transmembrane protein 80 isoform X2

      UniProtKB/TrEMBL
      A0AAA9T633
      Conserved Domains (1) summary
      pfam09799
      Location:21 → 124
      Transmemb_17; Predicted membrane protein

    3. XM_059883007.1 → XP_059738990.1  transmembrane protein 80 isoform X4

      UniProtKB/TrEMBL
      A0AAA9T633

    4. XM_059883004.1 → XP_059738987.1  transmembrane protein 80 isoform X1

      UniProtKB/Swiss-Prot
      A1A4P6
      UniProtKB/TrEMBL
      A0AAA9T633
      Related
      ENSBTAP00000092131.1, ENSBTAT00000094877.1

    5. XM_059883009.1 → XP_059738992.1  transmembrane protein 80 isoform X4

      UniProtKB/TrEMBL
      A0AAA9T633

    6. XM_059883008.1 → XP_059738991.1  transmembrane protein 80 isoform X4

      UniProtKB/TrEMBL
      A0AAA9T633
      Related
      ENSBTAP00000094209.1, ENSBTAT00000107312.1

    7. XM_015461364.3 → XP_015316850.1  transmembrane protein 80 isoform X3

      UniProtKB/TrEMBL
      A0AAA9T633, A0AAF6YT73
      Related
      ENSBTAP00000011892.5, ENSBTAT00000011892.6
      Conserved Domains (1) summary
      pfam09799
      Location:21 → 124
      Transmemb_17; Predicted membrane protein

    8. XM_059883006.1 → XP_059738989.1  transmembrane protein 80 isoform X4

      UniProtKB/TrEMBL
      A0AAA9T633

    9. XM_059883010.1 → XP_059738993.1  transmembrane protein 80 isoform X4

      UniProtKB/TrEMBL
      A0AAA9T633
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1A4P6.1 GenPept UniProtKB/Swiss-Prot:A1A4P6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials