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    ACIN1 apoptotic chromatin condensation inducer 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 534600, updated on 1-Jan-2025

    Summary

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    Official Symbol
    ACIN1provided by VGNC
    Official Full Name
    apoptotic chromatin condensation inducer 1provided by VGNC
    Primary source
    VGNC:VGNC:25539
    See related
    BGD:BT16005; Ensembl:ENSBTAG00000011571
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ACIN1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (21762224..21800707)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene chromosome 10 C14orf119 homolog Neighboring gene ciliated left-right organizer metallopeptidase Neighboring gene uncharacterized LOC112448635 Neighboring gene uncharacterized LOC112448395 Neighboring gene cadherin 24 Neighboring gene proteasome subunit beta 11 Neighboring gene proteasome 20S subunit beta 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ASAP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apoptotic chromatin condensation inducer in the nucleus

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      21762224..21800707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003586511.6 → XP_003586559.1  apoptotic chromatin condensation inducer in the nucleus isoform X4

      See identical proteins and their annotated locations for XP_003586559.1

      Conserved Domains (3) summary
      smart00513
      Location:72 → 106
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      cd12432
      Location:991 → 1077
      RRM_ACINU; RNA recognition motif in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
      pfam16294
      Location:1145 → 1216
      RSB_motif; RNSP1-SAP18 binding (RSB) motif

    2. XM_010809043.4 → XP_010807345.1  apoptotic chromatin condensation inducer in the nucleus isoform X3

      See identical proteins and their annotated locations for XP_010807345.1

      Conserved Domains (3) summary
      smart00513
      Location:72 → 106
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      cd12432
      Location:992 → 1078
      RRM_ACINU; RNA recognition motif in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
      pfam16294
      Location:1146 → 1217
      RSB_motif; RNSP1-SAP18 binding (RSB) motif

    3. XM_059890786.1 → XP_059746769.1  apoptotic chromatin condensation inducer in the nucleus isoform X2

    4. XM_024997950.2 → XP_024853718.2  apoptotic chromatin condensation inducer in the nucleus isoform X6

    5. XM_003586509.6 → XP_003586557.1  apoptotic chromatin condensation inducer in the nucleus isoform X1

      See identical proteins and their annotated locations for XP_003586557.1

      Conserved Domains (3) summary
      smart00513
      Location:72 → 106
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      cd12432
      Location:1004 → 1090
      RRM_ACINU; RNA recognition motif in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
      pfam16294
      Location:1158 → 1229
      RSB_motif; RNSP1-SAP18 binding (RSB) motif

    6. XM_003586510.6 → XP_003586558.1  apoptotic chromatin condensation inducer in the nucleus isoform X5

      See identical proteins and their annotated locations for XP_003586558.1

      Conserved Domains (3) summary
      smart00513
      Location:72 → 106
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      cd12432
      Location:964 → 1050
      RRM_ACINU; RNA recognition motif in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
      pfam16294
      Location:1118 → 1189
      RSB_motif; RNSP1-SAP18 binding (RSB) motif

    7. XM_003586513.5 → XP_003586561.1  apoptotic chromatin condensation inducer in the nucleus isoform X8

      See identical proteins and their annotated locations for XP_003586561.1

      UniProtKB/TrEMBL
      A7Z082
      Conserved Domains (2) summary
      cd12432
      Location:253 → 339
      RRM_ACINU; RNA recognition motif in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
      pfam16294
      Location:407 → 478
      RSB_motif; RNSP1-SAP18 binding (RSB) motif

    8. XM_015473070.3 → XP_015328556.1  apoptotic chromatin condensation inducer in the nucleus isoform X7

      UniProtKB/TrEMBL
      F6QIB4
      Related
      ENSBTAP00000002488.5, ENSBTAT00000002488.6
      Conserved Domains (2) summary
      cd12432
      Location:285 → 371
      RRM_ACINU; RNA recognition motif in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
      pfam16294
      Location:480 → 510
      RSB_motif; RNSP1-SAP18 binding (RSB) motif

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001105410.1: Suppressed sequence

      Description
      NM_001105410.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: ACIN1 (GeneID:22985).
    Nucleotide Protein Strain
    Heading Accession and Version

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